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Series GSE134354 Query DataSets for GSE134354
Status Public on Jan 03, 2020
Title tRNA 2’-O-methylation by a duo of TRM7/FTSJ1 proteins modulates small RNA silencing in Drosophila.
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Summary 2’-O-methylation (Nm) represents one of the most common RNA modifications. Nm affects RNA structure and function with crucial roles in various RNA-mediated processes ranging from RNA silencing, translation, self versus non-self recognition to viral defense mechanisms. Here, we identify two novel Nm methyltransferases (Nm-MTases) in Drosophila melanogaster (CG7009 and CG5220) as functional orthologs of yeast TRM7 and human FTSJ1. Genetic knockout studies together with MALDI-TOF mass spectrometry and RiboMethSeq mapping revealed that CG7009 is responsible for methylating the wobble position in tRNAPhe, tRNATrp and tRNALeu, while subsequently, CG5220 methylates position C32 in the same tRNAs and targets also additional tRNAs. CG7009 or CG5220 mutant animals were viable and fertile but exhibited various phenotypes such as life span reduction, small RNA pathways dysfunction and increased sensitivity to RNA virus infections. Our results provide the first detailed characterization of two TRM7 family members in Drosophila and uncover a molecular link between enzymes catalysing Nm at specific tRNAs and small RNA-induced gene silencing pathways.

 
Overall design Knockdown of methyltransferase CG7009 using dsRNA and control knockdown using double stranded RNA for LacZ. The experiment was performed in duplicates for the control and triplicates CG7009 in S2R+ cells.
 
Contributor(s) Roignant J, Kreim N
Citation(s) 31943105
Submission date Jul 16, 2019
Last update date Mar 09, 2020
Contact name Jean-Yves Roignant
Organization name Institute of molecular Biology
Lab Roignant
Street address Ackermannweg 4
City Mainz
ZIP/Postal code 55128
Country Germany
 
Platforms (1)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
Samples (5)
GSM3943040 Ctrl_1
GSM3943041 Ctrl_2
GSM3943042 CG7009_1
Relations
BioProject PRJNA554844
SRA SRP214805

Download family Format
SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE134354_RAW.tar 360.0 Kb (http)(custom) TAR (of TSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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