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| Status |
Public on Apr 30, 2020 |
| Title |
Linking Indirect Effects of Cytomegalovirus to Modulation of Monocyte Innate Immune Function |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Purpose: To use next-generation sequencing (NGS) to dissect the human monocyte-CMV host-pathogen interface.
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| Overall design |
Methods: mRNA profiles of human monocytes isolated from immunocompetent donors and subsequently infected ex vivo with CMV were generated by deep sequencing.
**Raw data for Samples GSM4728653-GSM4728660 will be submitted to dbGAP**
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| Contributor(s) |
Sen P, Wilkie AR, Ji F, Taylor IJ, Velasquez-Palafox M, Fernandez R, Morsett LM, Abels ER, Lane RJ, Hickman SE, Means TK, Rosenberg ES, Sadreyev RI, Coen DM, Fishman JA, ElKhoury J, Yang Y, Vanni EA, Pesola JM, Li B, Piper M |
| Citation(s) |
32494628 |
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| Submission date |
May 31, 2019 |
| Last update date |
Aug 17, 2020 |
| Contact name |
Pritha Sen |
| E-mail(s) |
[email protected]
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| Organization name |
Massachusetts General Hospital
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| Street address |
149 13th street
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| City |
Charlestown |
| State/province |
Massachusetts |
| ZIP/Postal code |
02129 |
| Country |
USA |
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| Platforms (2) |
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| Samples (79)
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| Relations |
| BioProject |
PRJNA545723 |
| SRA |
SRP200051 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE132048.raw.cnt.table.txt.gz |
728.0 Kb |
(ftp)(http) |
TXT |
| GSE132048_26F_5_23_18_S1.counts.umiCounts.aboveBackground.table.csv.gz |
1.2 Mb |
(ftp)(http) |
CSV |
| GSE132048_26F_TB40_5_23_18_S1.counts.umiCounts.aboveBackground.table.csv.gz |
1013.8 Kb |
(ftp)(http) |
CSV |
| GSE132048_31FT840_CD14T_S1.counts.umiCounts.aboveBackground.table.csv.gz |
911.2 Kb |
(ftp)(http) |
CSV |
| GSE132048_44MMOZK_CD14T_S1.counts.umiCounts.aboveBackground.table.csv.gz |
2.2 Mb |
(ftp)(http) |
CSV |
| GSE132048_44MTB40_CD14T_S1.counts.umiCounts.aboveBackground.table.csv.gz |
1.6 Mb |
(ftp)(http) |
CSV |
| GSE132048_61M_TB40_5_23_18_S1.counts.umiCounts.aboveBackground.table.csv.gz |
1.3 Mb |
(ftp)(http) |
CSV |
| GSE132048_61M_mock_5_23_18_S1.counts.umiCounts.aboveBackground.table.csv.gz |
1.5 Mb |
(ftp)(http) |
CSV |
| GSE132048_RAW.tar |
103.9 Mb |
(http)(custom) |
TAR (of TAR) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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