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Series GSE129688 Query DataSets for GSE129688
Status Public on Mar 12, 2021
Title UBB+1-induced activation of autophagy reduces cytotoxicity of amyloid-β in yeast
Platform organisms Schizosaccharomyces pombe; Saccharomyces cerevisiae
Sample organism Saccharomyces cerevisiae
Experiment type Expression profiling by array
Summary UBB+1 is a mutated version of ubiquitin B caused by a transcriptional frameshift. The accumulation of UBB+1, has been linked to ubiquitin-proteasome system (UPS) dysfunction and neurodegeneration. Alzheimer’s disease (AD) is the most common form of neurodegeneration and accumulation of amyloid β (Aβ) in the brain is a prominent neuropathological feature of AD. In our previous study, we found that low expression of UBB+1 could protect cells against several stresses during chronological aging. Here, we applied the genome-wide expression analyses and found that low UBB+1 expression activated the autophagy pathway. Low UBB+1 expression was shown to upregulate vacuolar activity and promote transport of the ATG8p (autophagic marker) to the vacuole. To further study the effects, we expressed low level of UBB+1 in our humanized yeast Aβ models with the expression of either Aβ42 or Aβ40. Interestingly, the co-expression of UBB+1 with Aβ42 or Aβ40 showed a reduction of intracellular Aβ levels and increased chronological life span. In the autophagy deficient mutant background (atg1∆), the intracellular Aβ levels were not affected by UBB+1 expression. Our findings suggest a mechanism of UBB+1 action in reducing intracellular levels of Aβ.
 
Overall design The goal of the present study is to evaluate the impact of low expression level of UBB+1 on yeast physiology and transcriptome profiles following the growth phases. Saccharomyces cerevisiae expressing empty plasmid (control strain) and p413 TEF UBB+1 plasmid (LUBB+1 strain) respectively was cultivated in shake flask at 30℃. Samples were taken from duplicate cultures during exponential phase (EX) and day 6 (D6).
 
Contributor(s) Chen X, Muñoz-Arellano AJ, Petranovic D
Citation(s) 34751669
Submission date Apr 11, 2019
Last update date Dec 07, 2021
Contact name Xin Chen
E-mail(s) [email protected]
Organization name Chalmers University of Technology
Department Department of Biology and Biological Engineering
Street address Kemigården 4
City Göteborg
ZIP/Postal code 41296
Country Sweden
 
Platforms (1)
GPL2529 [Yeast_2] Affymetrix Yeast Genome 2.0 Array
Samples (8)
GSM3720103 control at EX (LUBB), biological rep1
GSM3720104 control at EX (LUBB), biological rep2
GSM3720105 control at D6 (LUBB), biological rep1
Relations
BioProject PRJNA532446

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129688_RAW.tar 6.6 Mb (http)(custom) TAR (of CEL)
Processed data included within Sample table

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