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Series GSE129236 Query DataSets for GSE129236
Status Public on Jun 14, 2019
Title A Role for FACT in RNA Polymerase II Promoter-Proximal Pausing
Organism Drosophila melanogaster
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.

FACT (Facilitates Chromatin Transcription) is an evolutionarily conserved histone chaperone that was initially identified as an activity capable of promoting RNA polymerase II transcription through nucleosomes in vitro. In this report, we describe a global analysis of FACT function in Pol II transcription in Drosophila. We present evidence that loss of FACT has a dramatic impact on Pol II elongation-coupled processes including H3K4 and H3K36 methylation, consistent with a role for FACT in coordinating histone modification and chromatin architecture during Pol II transcription. Importantly, we identify a role for FACT in the maintenance of promoter proximal Pol II pausing, a key step in transcription activation in higher eukaryotes. These findings bring to light a broader role for FACT in the regulation of Pol II transcription.
 
Overall design Refer to individual Series
 
Citation(s) 31242411
Submission date Apr 02, 2019
Last update date Jun 27, 2019
Contact name Joan W Conaway
E-mail(s) [email protected]
Organization name Stowers Institute for Medical Research
Street address 1000 E 50th St
City KANSAS CITY
State/province Missouri
ZIP/Postal code 64110
Country USA
 
Platforms (2)
GPL17275 Illumina HiSeq 2500 (Drosophila melanogaster)
GPL19132 Illumina NextSeq 500 (Drosophila melanogaster)
Samples (162)
GSM3106507 eGFPdsRNA_H2Av_input_Rep1
GSM3106508 eGFPdsRNA_H2Av_input_Rep2
GSM3106509 SSRP1dsRNA_a_H2Av_input_Rep1
This SuperSeries is composed of the following SubSeries:
GSE113470 Drosophila FACT Regulates Promoter Proximal Pol II Pausing and Chromatin Architecture [ChIP-seq]
GSE129235 Drosophila FACT Regulates Promoter Proximal Pol II Pausing and Chromatin Architecture [RNA-seq]
Relations
BioProject PRJNA530563

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE129236_RAW.tar 28.6 Gb (http)(custom) TAR (of BW, TAB)
SRA Run SelectorHelp

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