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| Status |
Public on Oct 15, 2019 |
| Title |
PRX2 and PRX25, peroxidases regulated by COG1, are involved in seed longevity in Arabidopsis |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Permeability is a crucial trait that affects seed longevity and is regulated by different polymers including proanthocyanidins, suberin, cutin and lignin located in the seed coat. By testing mutants in suberin transport and biosynthesis, we demonstrate the importance of this biopolymer to cope with seed deterioration. Transcriptomic analysis of cog1‐2D, a gain‐of‐function mutant with increased seed longevity, revealed the upregulation of several peroxidase genes. Reverse genetics analysing seed longevity uncovered redundancy within the seed coat peroxidase gene family, however after controlled deterioration treatment, seeds from the prx2 prx25 double and prx2 prx25 prx71 triple mutant plants presented lower germination than wild‐type plants. Transmission electron microscopy (TEM) analysis of the seed coat of these mutants showed a thinner palisade layer, but no changes were observed in proanthocyanidin accumulation or in the cuticle layer. Spectrophotometric quantification of acetyl bromide‐soluble lignin components indicated changes in the amount of total polyphenolics derived from suberin and/or lignin in the mutant seeds. Finally, the increased seed coat permeability to tetrazolium salts observed in the prx2 prx25 and prx2 prx25 prx71 mutant lines suggested that the lower permeability of the seed coats caused by altered polyphenolics is likely to be the main reason explaining their reduced seed longevity.
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| Overall design |
Arabidopsis seedlings cog1-2D mutant RNA-seq analisis vs Col-0 plants
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| Contributor(s) |
Bueso E, Renard J |
| Citation(s) |
31600827 |
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| Submission date |
Mar 27, 2019 |
| Last update date |
Feb 25, 2020 |
| Contact name |
Eduardo Bueso |
| E-mail(s) |
[email protected]
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| Organization name |
Universitat Politècnica de València
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| Department |
IBMCP
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| Lab |
1.10
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| Street address |
Ingeniero Fausto Elio, s/n
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| City |
Valencia |
| State/province |
Valencia |
| ZIP/Postal code |
46022 |
| Country |
Spain |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (6)
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| Relations |
| BioProject |
PRJNA529478 |
| SRA |
SRP189659 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE128953_Results_RNAseq_cog1-2D.xls.gz |
310.5 Kb |
(ftp)(http) |
XLS |
| GSE128953_genes.read_group_tracking.txt.gz |
1.5 Mb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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