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| Status |
Public on May 30, 2008 |
| Title |
Expression data from dark grown Arabidopsis Wild type (Wt, col-o) and pif1-2 (At2g20810, Salk_072677) mutant seedlings |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by array
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| Summary |
Arabidopsis bHLH transcription factor PIF1 has been shown function as a negative regulator of Chlorophyll biosynthesis. Pif1-2 mutant accumulate more protochlorophylide during prolonged dark growth condations, therefore the comparation between Wt and pif1-2 mutant will help us find the PIF1 target genes in Chlorophyll biosynthesis pathway at genome wide level under the dark grown conditions.
We used microarrays to detail the global gene expression under the regulation of PIF1.
Keywords: Genotype comparison
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| Overall design |
4 days dark grown Wt and pif1-2 seedlings were collected for isolation RNA. Standard Affymetrix protocal and 25K Affymetrix chip (ATH1) were used for Microarry hybridition.
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| Contributor(s) |
Shen H, Huq E |
| Citation(s) |
18591656 |
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| Submission date |
May 29, 2008 |
| Last update date |
Aug 28, 2018 |
| Contact name |
Enamul Huq |
| E-mail(s) |
[email protected]
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| Phone |
512-471-9848
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| Fax |
512-232-3402
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| URL |
http://www.sbs.utexas.edu/huq/lab/
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| Organization name |
The University of Texas at Austin
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| Department |
Molecular Cell & Developmental Biology
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| Lab |
Huq lab
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| Street address |
BIO21B, 205 W 24th St,
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| City |
Austin |
| State/province |
TX |
| ZIP/Postal code |
78712 |
| Country |
USA |
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| Platforms (1) |
| GPL198 |
[ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array |
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| Samples (6)
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| GSM292079 |
pif1-2, dark sample, biological rep1 |
| GSM292080 |
pif1-2, dark sample, biological rep2 |
| GSM292081 |
pif1-2, dark sample, biological rep3 |
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| Relations |
| BioProject |
PRJNA106231 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE11594_RAW.tar |
12.9 Mb |
(http)(custom) |
TAR (of CEL) |
| Processed data included within Sample table |
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