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| Status |
Public on Jun 15, 2018 |
| Title |
Differentially expressed genes after miRNA or siRNA transfection in human cancer cell lines III |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines ( pancreatic cancer, renal cell carcinoma, oral squamous cell carcinoma, prostate cancer and bladder cancer) were subjected to Agilent whole genome microarrays.
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| Overall design |
Human cell lines (PC3, SK-MES-1, SW1990, MDA-MB-231 and PANC1) were treated with miRNAs ( miR-144-3p, miR-144-5p, miR-204-5p, miR-130-5p and miR-130-3p), siRNAs (si-PIR).
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| Contributor(s) |
Seki N, Arai T |
| Citation(s) |
30444038, 30866526, 30375717 |
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| Submission date |
Jun 14, 2018 |
| Last update date |
Dec 31, 2019 |
| Contact name |
Naohiko Seki |
| E-mail(s) |
[email protected]
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| Phone |
+81-43-226-2971
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| Organization name |
Chiba University
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| Department |
Functional Genomics
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| Street address |
1-8-1, Inohana
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| City |
Chiba |
| State/province |
Chiba |
| ZIP/Postal code |
260-8670 |
| Country |
Japan |
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| Platforms (1) |
| GPL20844 |
Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Feature Number Version] |
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| Samples (8)
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| GSM3190200 |
Differentially expressed genes by knocking down of PIR-2 in PC3 |
| GSM3190201 |
Differentially expressed genes by knocking down of PIR-3 in PC3 |
| GSM3190202 |
Identification of miR-144-5p target genes in SK-MES-1 |
| GSM3190203 |
Identification of miR-144-3p target genes in SK-MES-1 |
| GSM3190204 |
Identification of miR-204-5p target genes in SW1990 |
| GSM3190205 |
Identification of miR-204-5p target genes in MDA-MB-231 |
| GSM3190206 |
Identification of miR-130-5p target genes in PANC1 |
| GSM3190207 |
Identification of miR-130-3p target genes in PANC1 |
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| Relations |
| BioProject |
PRJNA476101 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE115801_RAW.tar |
173.9 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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