|
| Status |
Public on Apr 20, 2019 |
| Title |
Degenerate 3'UTR DNA and RNA sequence data |
| Organism |
Homo sapiens |
| Experiment type |
Other
|
| Summary |
We assayed the expression of millions of alternative polyadenylation reporters constructed from randomized sequences
|
| |
|
| Overall design |
Alternative polyadenylation isoforms from the variant library were quantified using RNA-Seq, mapped to their degenerate 3'UTR source plasmid, and the sequence and expression data used to train a convolutional neural network
|
| |
|
| Contributor(s) |
Seelig G, Bogard N, Linder J |
| Citation(s) |
31178116 |
| |
| Submission date |
Apr 30, 2018 |
| Last update date |
Nov 18, 2021 |
| Contact name |
Georg Seelig |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Washington
|
| Department |
Electrical Engineering
|
| Street address |
3946 W Stevens Way NE
|
| City |
Seattle |
| State/province |
WA |
| ZIP/Postal code |
98195-0001 |
| Country |
USA |
| |
|
| Platforms (2) |
|
| Samples (14)
|
| GSM3121176 |
alien1_dna: fully_randomized_1_alien1 plasmid DNA sequencing |
| GSM3121177 |
alien2_dna: fully_randomized_2_alien2 plasmid DNA sequencing |
| GSM3121178 |
aars_dna: human plasmid DNA sequencing human UTR backgrounds |
| GSM3121179 |
atr_dna: human plasmid DNA sequencing human UTR backgrounds |
| GSM3121180 |
hspe1_dna: human plasmid DNA sequencing human UTR backgrounds |
| GSM3121181 |
snhg6_dna: human plasmid DNA sequencing human UTR backgrounds |
| GSM3121182 |
sox13_dna: human plasmid DNA sequencing human UTR backgrounds |
| GSM3121183 |
whammp2_dna: human plasmid DNA sequencing human UTR backgrounds |
| GSM3121184 |
tomm5_dna: human_tomm5 plasmid DNA sequencing |
| GSM3121185 |
alien1_rna: fully_randomized_1_alien1 RNA sequencing |
| GSM3121186 |
alien2_rna: fully_randomized_2_alien2 RNA sequencing |
| GSM3121187 |
apa_six_rna: human_six RNA sequencing |
| GSM3121188 |
tomm5_rna: human_tomm5 RNA sequencing |
| GSM3780566 |
apa_array: human_custom_library |
|
| Relations |
| BioProject |
PRJNA454268 |
| SRA |
SRP144016 |
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