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Series GSE113440 Query DataSets for GSE113440
Status Public on Apr 21, 2018
Title MicroRNA-590-3p promotes ovarian cancer growth and metastasis via a novel FOXA2-Versican pathway
Organism Homo sapiens
Experiment type Expression profiling by array
Summary Epithelial ovarian cancer (EOC) is the deadliest gynecological cancer. MicroRNAs (miRNAs) are small non-coding RNAs that play important roles in gene regulation and their dysregulation is associated with many diseases. In this study, we determined the expression and function of miR-590-3p in EOC. We found that miR-590-3p levels were higher in high-grade carcinoma when compared to low-grade or tumours with low malignant potential. Interestingly, plasma levels of miR-590-3p were significantly higher in EOC patients than in subjects with benign gynaecological disorders. Transient transfection of miR-590-3p mimics, or stable transfection of mir-590, increased cell growth, migration, and invasion. In vivo studies revealed that mir-590 accelerated tumour growth and metastasis. Using a cDNA microarray, we identified Forkhead box A2 (FOXA2) and Versican (VCAN) as a top downregulated and a top upregulated gene, respectively, by mir-590. We showed that miR-590-3p targeted FOXA2 3’ UTR to suppress its expression. In addition, knockdown of FOXA2 by siRNAs or knockout of FOXA2 by CRISPR/Cas9 enhanced cell proliferation, migration, and invasion. Overexpression of FOXA2 decreased, while knockout of FOXA2 increased, VCAN mRNA and protein levels and ChIP-qPCR revealed that FOXA2 binds to VCAN promoter. Interrogation of the TCGA ovarian cancer database revealed a negative relationship between FOXA2 and VCAN mRNA levels in EOC tumours and that high FOXA2/low VCAN mRNA levels in tumours were positively correlated with patient survival. Finally, overexpression of FOXA2 or silencing of VCAN reversed the effects of mir-590. These findings demonstrate that miR-590-3p promotes EOC development via a novel FOXA2-VCAN pathway.
 
Overall design A total of 6 samples were analyzed. Three control (EV) and three mir-590 overexpressing samples
 
Contributor(s) Salem M, Peng C
Citation(s) 29748371
Submission date Apr 20, 2018
Last update date Aug 13, 2018
Contact name Chun Peng
E-mail(s) [email protected]
Organization name York University
Department Biology
Street address 4700 Keele Street, North York, ON, Canada
City Toronto
State/province Ontario
ZIP/Postal code M3J 1P3
Country Canada
 
Platforms (1)
GPL10558 Illumina HumanHT-12 V4.0 expression beadchip
Samples (6)
GSM3106352 EV 1
GSM3106353 EV 2
GSM3106354 EV 3
Relations
BioProject PRJNA451190

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113440_RAW.tar 35.8 Mb (http)(custom) TAR (of IDAT)
GSE113440_non-normalized.txt.gz 1.4 Mb (ftp)(http) TXT
GSE113440_normalized.txt.gz 2.2 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data are available on Series record

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