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| Status |
Public on Nov 09, 2018 |
| Title |
Protein-interaction profile sequencing of 4 week old leaves in Arabidopsis ABI3:MTA plants. |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Other
|
| Summary |
In order to investigate the influence of m6A on RNA secondary-structure and RNA-protein interactions, we performed protein-interaction profile sequencing (PIP-seq)
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| Overall design |
2 replicates per genotype of protein interaction profile sequencing (PIP-seq) in Arabidopsis thaliana ecotype Col-0 ABI3:MTA (mta) plants. Each rep is are crosslinked with formaldehyde split into structure-only and protein-bound libraries and further split to be treated by two different RNases (ssRNase and dsRNase).
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| Contributor(s) |
Anderson SJ, Yu X, Gosai SJ, Anderson ZD, Fray RG, Gregory BD |
| Citation(s) |
30380407, 32817553 |
| |
| Submission date |
Jan 04, 2018 |
| Last update date |
Sep 21, 2020 |
| Contact name |
Stephen James Anderson |
| E-mail(s) |
[email protected]
|
| Organization name |
University of Pennsylvania
|
| Department |
Biology
|
| Lab |
Brian Gregory
|
| Street address |
433 South University Avenue
|
| City |
Philadelphia |
| State/province |
PA |
| ZIP/Postal code |
19104 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
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| Samples (16)
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| This SubSeries is part of SuperSeries: |
| GSE108852 |
N6-methyladenosine-mediated structural changes are associated with transcript cleavage and stability in Arabidopsis |
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| Relations |
| BioProject |
PRJNA428513 |
| SRA |
SRP128058 |
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