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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 14, 2017 |
| Title |
Differentially expressed genes after miRNA or siRNA transfection in multiple human cancer cell lines |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by array
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| Summary |
To identify differentially expressed genes by anti cancer treatments (microRNAs or siRNAs) in human cancer, several cell lines ( pancreatic cancer, renal cell carcinoma, oral squamous cell carcinoma, prostate cancer and bladder cancer) were subjected to Agilent whole genome microarrays.
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| Overall design |
Human cell lines (PANC-1, 786-O, A498, SAS, PC3 and T24) were treated with miRNAs (miR-455-3p, miR-455-5p, miR-451a, miR-144-3p, miR-144-5p, miR-135-5p, miR-135-3p, miR-30a-5p, miR-30a-3p, miR-184, miR-199-3p, miR-107, miR-185-5p, miR-320b and miR-320c), siRNAs (si-PHLDA2).
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| Contributor(s) |
Seki N, Arai T |
| Citation(s) |
29968393, 29928475 |
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| Submission date |
Nov 13, 2017 |
| Last update date |
Jul 26, 2019 |
| Contact name |
Naohiko Seki |
| E-mail(s) |
[email protected]
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| Phone |
+81-43-226-2971
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| Organization name |
Chiba University
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| Department |
Functional Genomics
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| Street address |
1-8-1, Inohana
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| City |
Chiba |
| State/province |
Chiba |
| ZIP/Postal code |
260-8670 |
| Country |
Japan |
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| Platforms (1) |
| GPL20844 |
Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Feature Number Version] |
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| Samples (16)
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| GSM2850314 |
Differentially expressed genes by knocking down of PHLDA2-2 in PANC-1 |
| GSM2850315 |
Differentially expressed genes by knocking down of PHLDA2-3 in PANC-1 |
| GSM2850316 |
Identification of miR-455-3p target genes in 786-O |
| GSM2850317 |
Identification of miR-455-5p target genes in 786-O |
| GSM2850318 |
Identification of miR-451a and miR-144-3p/5p target genes in 786-O |
| GSM2850319 |
Identification of miR-451a and miR-144-3p/5p target genes in A498 |
| GSM2850320 |
Identification of miR-135-5p target genes in SAS |
| GSM2850321 |
Identification of miR-135-3p target genes in SAS |
| GSM2850322 |
Identification of miR-184 target genes in PC3 |
| GSM2850323 |
Identification of miR-30a-5p target genes in PC3 |
| GSM2850324 |
Identification of miR-30a-3p target genes in PC3 |
| GSM2850325 |
Identification of miR-107 target genes in T24 |
| GSM2850326 |
Identification of miR-185-5p target genes in T24 |
| GSM2850327 |
Identification of miR-320b target genes in T24 |
| GSM2850328 |
Identification of miR-320c target genes in T24 |
| GSM2850329 |
Identification of miR-199-3p target genes in PC3 |
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| Relations |
| BioProject |
PRJNA418078 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE106791_RAW.tar |
338.1 Mb |
(http)(custom) |
TAR (of TXT) |
| Processed data included within Sample table |
| Processed data provided as supplementary file |
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