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Series GSE103286 Query DataSets for GSE103286
Status Public on Dec 28, 2020
Title Assessment of DNA methylation patterns related to osteoarthritis in baboon bone and cartilage using the 850K array
Platform organism Homo sapiens
Sample organism Papio sp.
Experiment type Methylation profiling by array
Summary The aim of this study was to identify DNA methylation patterns in femur trabecular bone and cartilage of adult baboons (n=28 with knee OA, n=28 without knee OA). The Illumina Infinium MethylationEPIC Array was used to assess these genome-wide methylation patterns.
 
Overall design Bisulphite converted DNA from the 56 baboons (n=56 bone samples, n=56 cartilage samples) were hybridized to the Illumina Infinium MethylationEPIC array.
 
Contributor(s) Housman G
Citation(s) 33325553
Submission date Aug 30, 2017
Last update date Jul 25, 2021
Contact name Genevieve Housman
E-mail(s) [email protected]
Organization name University of Chicago
Department Genetic Medicine
Street address 920 East 58th Street, CLSC 317
City Chicago
State/province IL
ZIP/Postal code 60637
Country USA
 
Platforms (1)
GPL21145 Infinium MethylationEPIC
Samples (112)
GSM2759726 genomic DNA from healthy adult distal femur trabecular bone Panu55_B (baboon_oa)
GSM2759727 genomic DNA from healthy adult distal femur trabecular bone Panu41_B (baboon_oa)
GSM2759728 genomic DNA from healthy adult distal femur trabecular bone Panu39_B (baboon_oa)
Relations
BioProject PRJNA401667

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE103286_RAW.tar 1.7 Gb (http)(custom) TAR (of IDAT)
GSE103286_matrix_baboon850Koa_raw_signal.csv.gz 600.9 Mb (ftp)(http) CSV
Processed data included within Sample table
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