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| Status |
Public on Jul 20, 2017 |
| Title |
comparative analysis of DNA methylation of soybean |
| Organism |
Glycine max |
| Experiment type |
Methylation profiling by high throughput sequencing
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| Summary |
In this study, comparative genome-wide DNA methylation profiles of the soybean CMS line NJCMS5A and its maintainer NJCMS5B were completed by whole-genome bisulfite sequencing. The results showed that 3,527 differentially methylated regions (DMRs) and 485 differentially methylated genes (DMGs), including 353 high-credible methylated genes, 56 methylated genes coding unknown protein and 76 novel methylated genes with no known function were identified. Finally, 14 key DMGs were identified as potentially related to CMS in soybean.
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| Overall design |
genome-wide DNA methylation profiles of the soybean CMS line NJCMS5A and its maintainer NJCMS5B were completed by whole-genome bisulfite sequencing
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| Contributor(s) |
Li Y, Ding X, Wang X, He T, Zhang H, Yang L, Wang T, Chen L, Gai J, Yang S |
| Citation(s) |
28806912 |
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| Submission date |
Jul 19, 2017 |
| Last update date |
May 15, 2019 |
| Contact name |
yanwei li |
| E-mail(s) |
[email protected]
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| Phone |
15150531172
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| Organization name |
Nanjing Agricultural University
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| Department |
College of Agriculture
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| Street address |
No. 1 Weigang Street, Xuanwu Region, Nanjing City
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| City |
nanjing |
| State/province |
jiangsu |
| ZIP/Postal code |
210095 |
| Country |
China |
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| Platforms (1) |
| GPL19246 |
Illumina HiSeq 2500 (Glycine max) |
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| Samples (2) |
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| Relations |
| BioProject |
PRJNA395071 |
| SRA |
SRP113006 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE101652_A_vs_B.DMR.annotation.xls.gz |
25.9 Kb |
(ftp)(http) |
XLS |
| GSE101652_A_vs_B.DMR.xls.gz |
169.7 Kb |
(ftp)(http) |
XLS |
| GSE101652_A_vs_B.DMR_genes.GO_enrichment_result.xls.gz |
46.7 Kb |
(ftp)(http) |
XLS |
| GSE101652_A_vs_B.DMR_genes.identify.xls.gz |
6.4 Kb |
(ftp)(http) |
XLS |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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