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Platform GPL9936 Query DataSets for GPL9936
Status Public on Apr 06, 2010
Title Ectocarpus siliculosus tiling array ChIP6
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Ectocarpus siliculosus
Manufacturer Roche-Nimblegen
Manufacture protocol Synthesized on glass-based slides using a maskless array synthesizer (Nimblegen technology).
Support glass
Coating unknown
 
Description 50-mer probes tiling the entire Ectocarpus siliculosus genome
Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
 
Web link http://ectocarp.us
Submission date Jan 15, 2010
Last update date Apr 06, 2010
Contact name Manoj Samanta
E-mail(s) [email protected]
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
 
Samples (2) GSM497635, GSM497636
Series (1)
GSE19912 A high-resolution transcriptome map of Ectocarpus siliculosus

Data table header descriptions
ID
X X coordinate of the array feature
Y Y coordinate of the array feature
SEQUENCE DNA sequence of oligonucleotide
PROBE_TYPE Type of probe (BLOCK1 = probes from genome sequence, CUSTOMER_CONTROL = control probes included in our design, RANDOM = random probes included by Nimblegen, NGS_CONTROLS, V_CODE, H_CODE = control probes included by Nimblegen)

Data table
ID X Y SEQUENCE PROBE_TYPE
66092276.743.975 743 975 GTGCCTCAAGGTCGGCAAGGCGTCTCGCCGCGCTGCCCAAGAGATACTTG BLOCK1
66073412.745.975 745 975 ATGTCTACAAGCCAGCCGTGGGTTTACTTTATGACCCTCTTCTAATTTTG BLOCK1
66101475.747.975 747 975 GAATCCCGTCTCTATTATCTCTTGCTCGTTGCTTCCAAAACAACCCTATA BLOCK1
66091508.749.975 749 975 GGGGCGTTTAGGAGTCGGGGGACGATTTATGTATGCCGTTTGTGTATCCT BLOCK1
66107780.751.975 751 975 AGATCACAAGAAAGCACCGTGGTGCACTGTAGCACGCTTCGATGCTCACT BLOCK1
65763650.753.975 753 975 TTAGATAATCGTGAATGACTACGCGGAAAATAACTAATATCTTAAGGAAA BLOCK1
66037757.755.975 755 975 CAGGCAAAGCTAGCTACCGAAGCGTGGAAACCACCCATGCGGATCCGCGA BLOCK1
65957063.757.975 757 975 GCACGCTTACCCCCGCTTCTCCCTACTCTTGCCCTGCTTGCGACCGCCTT BLOCK1
65787386.759.975 759 975 ACTTCTGGCACAACACACACGTGGAGTCGCCATCTCGTGTGGATTTCTGC BLOCK1
65925802.761.975 761 975 TCCCGGGCGTCGCGATGAGGATGCCCTGGTCCAAGTCTCTGCGGTTCTAG BLOCK1
65855441.763.975 763 975 CTTTTCTTTTTCGCTGCTGCGCGGTGAAGACCAGAAGCACCCCGGGTAGA BLOCK1
65811212.765.975 765 975 GCGGCGAGCTTGGCGGCGATGAAGGCGGACCTCGCCGCTAACCCGGCGTG BLOCK1
65923331.767.975 767 975 TCAGCTGAGACCAAGGGGGTGAACAATGGCGGATCATTCTTGGTTAGAGC BLOCK1
65811715.2.976 2 976 TCCCCACCCACTAGGATGTGGAGCAGTCGAGCTTTGAAAGTCGGTCCAGC BLOCK1
65867701.4.976 4 976 CTCGACTGCTGCTTTGATCAATGTTATGTCCTCCTCTCGTTCCCTCCTCC BLOCK1
65797625.6.976 6 976 CGCGCAAGCACAGGAGCTGGAGGAGAAGCAGGCGCGAGAGCGACGCGACA BLOCK1
65798118.8.976 8 976 CCGTTGGTCGTTGTCTCAGAATTCGCTCCTGTATAACGAACAACGTCTGA BLOCK1
65925364.10.976 10 976 GCCTGTCCAGACGCTGGTAAACTTCGACATGGTCTTGGAGAGCAGAAAGG BLOCK1
65930450.12.976 12 976 AGAGCCCTGAAGAAGGGAGAGGGAAAGCTGGGCGTGGGGGCATACAACGC BLOCK1
65955603.14.976 14 976 GACAACCGCCTTTTTTTCGTTGGCCACCTCCGTGTCTTTAGCAATCTGGA BLOCK1

Total number of rows: 386131

Table truncated, full table size 31150 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9936_080130_Esili_MS_ChIP6.ndf.gz 14.4 Mb (ftp)(http) NDF

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