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Platform GPL9934 Query DataSets for GPL9934
Status Public on Apr 06, 2010
Title Ectocarpus siliculosus tiling array ChIP4
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Ectocarpus siliculosus
Manufacturer Roche-Nimblegen
Manufacture protocol Synthesized on glass-based slides using a maskless array synthesizer (Nimblegen technology).
Support glass
Coating unknown
 
Description 50-mer probes tiling the entire Ectocarpus siliculosus genome
Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
 
Web link http://ectocarp.us
Submission date Jan 15, 2010
Last update date Apr 06, 2010
Contact name Manoj Samanta
E-mail(s) [email protected]
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
 
Samples (2) GSM497631, GSM497632
Series (1)
GSE19912 A high-resolution transcriptome map of Ectocarpus siliculosus

Data table header descriptions
ID
X X coordinate of the array feature
Y Y coordinate of the array feature
SEQUENCE DNA sequence of oligonucleotide
PROBE_TYPE Type of probe (BLOCK1 = probes from genome sequence, CUSTOMER_CONTROL = control probes included in our design, RANDOM = random probes included by Nimblegen, NGS_CONTROLS, V_CODE, H_CODE = control probes included by Nimblegen)

Data table
ID X Y SEQUENCE PROBE_TYPE
65808802.508.150 508 150 AATCGAAAAAAGGCGTACGGGCGTATGGAACGCGGATGGGTTACACACAA BLOCK1
65791004.510.150 510 150 TCGTACCTCTACTAAGGACGCACATCAGTGTGTTCGTTGCGTCGTTGCGT BLOCK1
65801319.512.150 512 150 GGGAGCGGAGGAAGGGGCCGGCTCGTGGCGCAGGTGGCGCGACGGCGACG BLOCK1
65942649.514.150 514 150 AACTTCGAAATTTCAACTCGCTCTTCTCCTTTGTAGGATACTCCACGCAC BLOCK1
65753442.516.150 516 150 TTAGCCAAGGACCCTACTCGACCCCCTGGGGGGCCCCTGTTGCGTAGTGT BLOCK1
65919680.518.150 518 150 GCGGCGCGTTGGTGGGGGTAACAAGATTGATTTCGTTGTTGGATACACGA BLOCK1
66091982.520.150 520 150 TCTAACGTGTCCCTACTGTACCTTTCCAAAACAAAAAAAAACTTTCTGGT BLOCK1
65796731.522.150 522 150 AACCGGTGATGGAAATGCGACCAAAGCGATGGATAACCTTCGCGCAGAGA BLOCK1
65977603.524.150 524 150 CTAGCAGTTGCTCACCGCGACTATAGAGAGCCTCTGAAGCACCGCAAGGC BLOCK1
66113134.526.150 526 150 AGAGATGCGTGATGGAGTTTCCAGGGTGCAGACGCCATAGACAGAAGAAG BLOCK1
65926290.532.150 532 150 CCCCCCCCCGCCCCCCCTTTTTTTTACCCGCAACACCCAAAAATCCTAAA BLOCK1
66077329.534.150 534 150 CGTCATAACGACAGACCCGCAAGATACGGTGAAATGAAACCGAACAAAAA BLOCK1
66103866.536.150 536 150 CTTTTAACCATGTACCATGGTACATTCCATATTTGTTTCCAGCTGTCTTG BLOCK1
65988193.538.150 538 150 TTTTTGCATGATTTTGGGTCAGCACTCACAGCCCTTCTGCCTGGTAGGAG BLOCK1
65817611.540.150 540 150 GTGCCTACTTTTGCGGCAAAGAGAACAACACGATGACGTGACACGCCGAC BLOCK1
65827395.542.150 542 150 AGAAAAACAGGGCTTGAAAACACGTAGCCAACAACAACGTACTTTGCGTA BLOCK1
65779422.544.150 544 150 GCGCGTCCAAAACCCCCTCCGCTGCGCGGGATTGCTACCCAGCAGCTTTG BLOCK1
65892977.546.150 546 150 TGCTCTGCATCTTCACCGTCAGCGCCCGCTGCGAGGACATGGTCTTGCTC BLOCK1
66103572.548.150 548 150 TCGTAACAACAACGACACGTGTCGACGACACGTACACAAAACTGTTTTAA BLOCK1
65935828.550.150 550 150 CGACCTTCCACTTACTTGGATCATACGCTGGATGGCACAAATTGTTTCGG BLOCK1

Total number of rows: 386131

Table truncated, full table size 31150 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9934_080130_Esili_MS_ChIP4.ndf.gz 14.4 Mb (ftp)(http) NDF

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