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Platform GPL9933 Query DataSets for GPL9933
Status Public on Apr 06, 2010
Title Ectocarpus siliculosus tiling array ChIP3
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Ectocarpus siliculosus
Manufacturer Roche-Nimblegen
Manufacture protocol Synthesized on glass-based slides using a maskless array synthesizer (Nimblegen technology).
Support glass
Coating unknown
 
Description 50-mer probes tiling the entire Ectocarpus siliculosus genome
Control probes were placed on all arrays for monitoring hybridization quality and data normalization.
 
Web link http://ectocarp.us
Submission date Jan 15, 2010
Last update date Apr 06, 2010
Contact name Manoj Samanta
E-mail(s) [email protected]
Phone 408-472-7927
Organization name Systemix Institute
Street address 2240 Homestead Court #309
City Los Altos
State/province CA
ZIP/Postal code 94024
Country USA
 
Samples (2) GSM497629, GSM497630
Series (1)
GSE19912 A high-resolution transcriptome map of Ectocarpus siliculosus

Data table header descriptions
ID
X X coordinate of the array feature
Y Y coordinate of the array feature
SEQUENCE DNA sequence of oligonucleotide
PROBE_TYPE Type of probe (BLOCK1 = probes from genome sequence, CUSTOMER_CONTROL = control probes included in our design, RANDOM = random probes included by Nimblegen, NGS_CONTROLS, V_CODE, H_CODE = control probes included by Nimblegen)

Data table
ID X Y SEQUENCE PROBE_TYPE
66081319.216.52 216 52 GCAGGTGTTTATTGGCGGACGGAGGCATTGGTCTGATGTCACAAAATAGC BLOCK1
65767499.218.52 218 52 GGGTCCCGCTGAGCTACGGCCAGACTTACCCGGGATGAACGTTGCGCCGA BLOCK1
66097948.220.52 220 52 GCCGCTACATCCTGCTGGGTGTGCGGCGTGTTGGGCTAAGGATGACAGCT BLOCK1
65738135.222.52 222 52 TACAGCAGACCGCTCCCCGTAAATTTTTCTTCGGGAATTTGGGTTCAGAG BLOCK1
65855422.224.52 224 52 GTCTGAGTTGTCTGATAGGTTCTCTGACTCGGAGTTGTCTGAGTTGTCAG BLOCK1
65737383.226.52 226 52 CATTTCTGAAAGCGTGTTATTGAAGTGGAGTTTATTAATAGCTCGTGCTG BLOCK1
66092556.228.52 228 52 CATCGTAAACGTGTCATATTAAGCCCAGAGCATATCATCGTCGCGTGACT BLOCK1
65751751.230.52 230 52 TCACGGAAAATAACCAAGTCAACAAGCATAGTGCCAACAACGACCTACTC BLOCK1
65879682.232.52 232 52 GTTCGACCCCAAGTCAACACGAACGCGTCCCCCTTTCCCTTTCCCATGAA BLOCK1
65841196.234.52 234 52 GGAGTTTGTTGTGCCTAGTGTTCGTGGAAGAGACGTCTGCATGGTGCCAG BLOCK1
65888408.236.52 236 52 CCATCAAGAGAGTGTGGAAGAAGCACGATACGCAGGACAGCAGGGGTGGC BLOCK1
65942640.238.52 238 52 CCTGGGGGGCGGGGGAGCACTCCTGCCAGCTTCTGGAAGCCGCTCTTAGG BLOCK1
65954132.240.52 240 52 CCTCTTGGTTCATTTTTCTGCGAAGGCTGCTACTAAATTCCATCATTTCA BLOCK1
66091419.242.52 242 52 CTCTTCCTGGTGGCGTTCTGCACGACGCTCATGGTCGCCTGCGAGACCGC BLOCK1
65840698.244.52 244 52 AGCGAGACCAAACGTACAGGTGAGGGGATCGCGTGCAACGGTAAGGTAGA BLOCK1
65873303.246.52 246 52 CGGCGACGATCATCGAGTCATGTTGCGCTACTGTAGGGGTTGTAGCCCGA BLOCK1
65740974.248.52 248 52 ACCATACACCAAGAATGTGAATGAGGCCAAGATAGTGGGGACAATGGAAA BLOCK1
66029736.250.52 250 52 AGTGCAGACCTCCTCATCGGCGTTAGCAACGCACGAAAGAGCCCCATTCT BLOCK1
65745492.252.52 252 52 TTCCCAGGAATGAAATGCGACCGAGGGCTGGTCCGTTCATTAGCACTTGT BLOCK1
65764780.254.52 254 52 GGGACAGAGGAGAACGAAGAGGTGGCGGCATAGCATGCTTGCGACCGGAG BLOCK1

Total number of rows: 386131

Table truncated, full table size 31150 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9933_080130_Esili_MS_ChIP3.ndf.gz 14.4 Mb (ftp)(http) NDF

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