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Platform GPL9325 Query DataSets for GPL9325
Status Public on Oct 01, 2009
Title NimbleGen Human 385K custom array [2007-05-01_SwitchGear_hg17_tiling]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol Standard NimbleGen protocol.
 
Description UCSC human genome build hg17
 
Submission date Sep 30, 2009
Last update date Nov 04, 2013
Contact name Danette Hartzell
E-mail(s) [email protected]
Organization name Promega
Street address 2800 Woods Hollow Road
City Madison
State/province WI
ZIP/Postal code 53711
Country USA
 
Samples (9) GSM458034, GSM458035, GSM458036, GSM458037, GSM458038, GSM458039 
Series (1)
GSE18347 CREB ChIP-chip and HaloCHIP-chip experiments
Relations
Alternative to GPL17888

Data table header descriptions
ID
PROBE_ID Unique ID for each probe
SEQUENCE Sequence of the oligo probe
SEQ_ID Geneomic region targeted (UCSC BUILD hg17)
CHR Chromosome
RANGE_GB GenBank Accession number
RANGE_START Position on chromosome (UCSC BUILD hg17)
LENGTH Length of the probe
SPOT_ID

Data table
ID PROBE_ID SEQUENCE SEQ_ID CHR RANGE_GB RANGE_START LENGTH SPOT_ID
1 CHR01FS000000500 GTCTGACCTGAGGAGAACTGTGCTCCGCCTTCAGAGTACCACCGA chr1:1-564 chr1 NC_000001.8 500 45
2 CHR01FS000007317 TGCACTGTGGGGTCCCAGGCCTCCCGAGCCGAGCCACCCGTCACC chr1:7073-8573 chr1 NC_000001.8 7317 45
3 CHR01FS000019301 CCTCCACTGCGCCCTCCCCGAGCGCGGCTCCAGGACCCCGTCGAC chr1:18017-21069 chr1 NC_000001.8 19301 45
4 CHR01FS000058133 TCACCCCTTTCCTGCTCACACAACCACAACCTGCAGCTATTACCT chr1:57553-59053 chr1 NC_000001.8 58133 45
5 CHR01FS000604312 TTCAGCAAGGTCAAAGGGAGTCCGAACTAGTCTCAGGCTTCAACA chr1:604132-610564 chr1 NC_000001.8 604312 45
6 CHR01FS000604864 TTATATCCTTCCCGTACTAATTAATCCCCTGGCCCAACCCGTCAT chr1:604132-610564 chr1 NC_000001.8 604864 45
7 CHR01FS000605262 GCCTGCTCCTTCTCACATGACAAAAACTAGCCCCCATCTCAATCA chr1:604132-610564 chr1 NC_000001.8 605262 45
8 CHR01FS000605335 AAGCCTTCTCCTCACTCTTTCAATCTTATCCATCATGGCAGGCAGTT chr1:604132-610564 chr1 NC_000001.8 605335 47
9 CHR01FS000605832 TTGAACACACAAAACCCACCCCATTCCTCCCCACACTCATCGCCC chr1:604132-610564 chr1 NC_000001.8 605832 45
10 CHR01FS000606629 TTACCCCCCTCTCTCCTACTCCTGCTTGCATCTGCTATAGTGGAG chr1:604132-610564 chr1 NC_000001.8 606629 45
11 CHR01FS000606704 CCTCCCTTGGCAGGGAACTACTCCCACCCTGGAGCCTCCGTAGAC chr1:604132-610564 chr1 NC_000001.8 606704 45
12 CHR01FS000606943 ACTAACAGACCGTAACCTCAACACCACCTTCTTCGACCCAGCCGG chr1:604132-610564 chr1 NC_000001.8 606943 45
13 CHR01FS000608216 CTAGTCCTTATCGCCCTCCCATCCCTACGCATCCTTTACATAACA chr1:604132-610564 chr1 NC_000001.8 608216 45
14 CHR01FS000608296 AATTGGCCATCAATGGTACTGAACCTACGAATACACCGACTACGG chr1:604132-610564 chr1 NC_000001.8 608296 45
15 CHR01FS000608549 TTCACTGCTACACGACCAGGGGTATACTACGGCCAATGCTCTGAA chr1:604132-610564 chr1 NC_000001.8 608549 45
16 CHR01FS000608950 TCTGTTCACTTCATTCATTGCCCCCACAATCCTAGGCCTACCCGC chr1:604132-610564 chr1 NC_000001.8 608950 45
17 CHR01FS000609659 GCCCATGGCCCCTAACAGGGGCCCTCTCAGCCCTCCTAATGACCT chr1:604132-610564 chr1 NC_000001.8 609659 45
18 CHR01FS000609734 CCACAACCCTCCTCATACTAGGCCTACTAACCAACACACTAACCA chr1:604132-610564 chr1 NC_000001.8 609734 45
19 CHR01FS000609904 GGATTTTTCTGAGCCTTTTACCACTCCAGCCTAGCTCCCACCCCC chr1:604132-610564 chr1 NC_000001.8 609904 45
20 CHR01FS000610147 CAAGCCTCAGAGTACTTCGAGGTTAAAATATTAGATATTTCCCCTGATACAGGG chr1:604132-610564 chr1 NC_000001.8 610147 54

Total number of rows: 391854

Table truncated, full table size 48138 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL9325_2007-05-01_SwitchGear_hg17_tiling.ndf.gz 24.4 Mb (ftp)(http) NDF

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