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Platform GPL8264 Query DataSets for GPL8264
Status Public on Apr 14, 2009
Title UNC PerouLab 244K Custom Human Array version 3
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Agilent Technologies
Manufacture protocol Agilent Technology (see manufacturer's website)
 
Description Agilent catalog probes plus custom probes designed at Dr. Charles Perou lab at UNC chapel hill
 
Contributor(s) Perou C
Submission date Mar 06, 2009
Last update date Jul 17, 2015
Contact name Charles M. Perou
E-mail(s) [email protected]
Organization name University of North Carolina at Chapel Hill
Department Professor of Genetics, and Pathology & Laboratory Medicine; Lineberger Comprehensive Cancer Center
Street address 12-044 Lineberger Comprehensive Cancer Center CB# 7295
City Chapel Hill
State/province NC
ZIP/Postal code 27599-7264
Country USA
 
Samples (36) GSM403057, GSM403058, GSM403059, GSM403060, GSM403061, GSM403064 
Series (4)
GSE16113 Activation of Host Wound Responses in Breast Cancer Microenvironment
GSE22384 Systematic Bias in Genomic Classification Due to Contaminating Normal Tissue in Breast Tumor Samples
GSE31589 Expression of Epithelial-to-Mesenchymal Transition (EMT)-associated genes in extratumoral microenvironment predicts poor clinical outcome in breast cancer patients

Data table header descriptions
ID
GB_ACC GenBank Accession Number
SPOT_ID
Public id GeneBank Accession number
Probe NAME Agilent Probe Name
Blast Gene ID Gene ID
Blast Refseq ID Refseq ID
Blast Gene Symbol Gene Symbol
Blast Gene Description Gene Description
Blast Chromosome Map Location Chromosome Map Location

Data table
ID GB_ACC SPOT_ID Public id Probe NAME Blast Gene ID Blast Refseq ID Blast Gene Symbol Blast Gene Description Blast Chromosome Map Location
1 --GE_BRIGHTCORNER GE_BRIGHTCORNER GE_BRIGHTCORNER GE_BrightCorner
2 --DARKCORNER DARKCORNER DARKCORNER DarkCorner
3 --DARKCORNER DARKCORNER DARKCORNER DarkCorner
4 NM_005427 NM_005427 A_23_P74078 7161 NM_005427.1 TP73 tumor protein p73 1p36.3
5 AL831818 AL831818 A_23_P213798 11346 NM_001109974.1 SYNPO synaptopodin 5q33.1
6 NM_000784 NM_000784 A_23_P131307 1593 NM_000784.2 CYP27A1 cytochrome P450, family 27, subfamily A, polypeptide 1 2q33-qter
7 NM_199444 NM_199444 A_24_P399622 11316 NM_199444.1|NM_199442.1|NM_007263.3 COPE coatomer protein complex, subunit epsilon 19p13.11
8 NM_032648 NM_032648 A_23_P96956 84734 NM_032648.2 C1orf90 chromosome 1 open reading frame 90 1p35.1
9 AK095012 AK095012 A_24_P323871
10 THC2242915 THC2242915 A_23_P51082
11 AC096749 AC096749 A_32_P180190
12 NM_018196 NM_018196 A_23_P217542 648605|55217 NM_018196.1|XM_939593.2 LOC648605|TMLHE similar to Trimethyllysine dioxygenase, mitochondrial precursor (Epsilon-trimethyllysine 2-oxoglutarate dioxygenase) (TML-alpha-ketoglutarate dioxygenase) (TML hydroxylase) (TML dioxygenase) (TMLD)|trimethyllysine hydroxylase, epsilon -|Xq28
13 NM_001005180 NM_001005180 A_23_P139244 387748 NM_001005180.1 OR56B1 olfactory receptor, family 56, subfamily B, member 1 11p15.4
14 NM_014763 NM_014763 NM_014763_MRPL19_3END_1
15 NM_014225 NM_014225 A_23_P107662 5518 NM_014225.3 PPP2R1A protein phosphatase 2 (formerly 2A), regulatory subunit A , alpha isoform 19q13.33
16 NM_194280 NM_194280 A_23_P77561 124446 NM_001083613.1|NM_194280.3 LOC124446 hypothetical protein BC017488 16p11.2
17 NM_000032 NM_000032 A_32_P22654 212 NM_001037969.1|NM_001037968.1|NM_000032.2|NM_001037967.1 ALAS2 aminolevulinate, delta-, synthase 2 (sideroblastic/hypochromic anemia) Xp11.21
18 NM_002868 NM_002868 A_23_P410998 5869 NM_002868.2 RAB5B RAB5B, member RAS oncogene family 12q13
19 NM_003586 NM_003586 A_23_P152330 8448 NM_003586.2 DOC2A double C2-like domains, alpha 16p11.2
20 NM_138462 NM_138462 A_23_P9270 116225 NM_138462.2 ZMYND19 zinc finger, MYND-type containing 19 9q34.3

Total number of rows: 243504

Table truncated, full table size 24568 Kbytes.




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