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Platform GPL7498 Query DataSets for GPL7498
Status Public on Oct 21, 2008
Title University of Texas at Austin Arabidopsis thaliana 29k 70-mer spotted oligoarray
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Arabidopsis thaliana
Manufacturer The University of Texas at Austin
Manufacture protocol The Arabidopsis thaliana Genome Oligo Set Version 3.0 0 contains 29,110 longmer probes and represents 26,173 protein-coding genes, 28,964 protein-coding gene transcripts, and 87 microRNA genes from A. thaliana. Every 70-mer oligo is spotted once on each slide.
Support glass
Coating aminosilane
 
Description The 70-mer oligo was designed from the 3'end of ATH1.cdna from the ATH1 release 5.0 of the TIGR A. thaliana genome and release 4.0 of the miRNA Registry at the Sanger Institute.
 
Web link http://omad.operon.com/download/index.php
Contributor(s) Ha M, Kim E, Chen ZJ
Submission date Oct 16, 2008
Last update date Oct 21, 2008
Contact name Misook Ha
E-mail(s) [email protected]
Phone 7732795900
Organization name National Heart Lung Blood Institute
Lab Laboratory of Epigenome Biology
Street address NIH
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
 
Samples (1) GSM334287
Series (2)
GSE9513 Duplicate genes increase expression diversity in closely related species and allopolyploids
GSE13468 Gene expression change in natural allotetraploid, A.suecica

Data table header descriptions
ID
SEQUENCE 70 nucleotide probe sequence
ORF Genes or Clones that can hybridize with probe

Data table
ID SEQUENCE ORF
A001457_01 AACAAGACAGTGATGAAGATAACAGCGACAAGGAGAAGGAAGTTCAAGGTAGTGACGCAGACAGTGACTA AT1G19880
A201576_01 GCAACATTGAGCAAAAGACATGTGGGTTCTGCGCTAGCCTTTGTCCTAGCTTCTTACTTGAACCAGCCTT AT3G03847
A010714_01 TCAACACGGAGAAACTAAGAGAACCCGAGCATTGTGATCAAGAGTTCTGCTTAAACGCAGAAGAGCTCTC AT3G58000
At30000728 ATCAGATCTCTAGATCACTCTGTTCTGCAGGGCCGCGTCATCACTGTTGAGAAGGCAAGACGTCGTAGAG AT1G07350
A008034_01 GGTGGGTTTACGTGAGGTATTGCTGACAATGGCGTCTCTGGGTCTATCCTTTCCTCCCGCCGCAAAAACG AT2G35390
A006550_01 TGGGTTCAACCATCGATAGAGAAGCTGTTGATGAAACGACACCGTTGGATTGAAAGATCTCCACCGTGGA AT2G45160
A000682_01 AAAAACGTCAACGTCGCGCTAACGAATTCCGGCGTCACAGGAATCTCTGTCACGACGGTTTTAGCTATGA AT1G77790
A200021_01 GCTGGTCCGAAGAAAACTATGAACCAGAGACTCTTGAAGCATCTTTTGGTGAACGCAGATGTTATTTAGC AT1G37150
At30014703 GATTCATACAGAGGATTCCCTTCTGCTTATTGTGTCACCTGAGAGGCATCCACAACGTTTGATTGCTTAT AT3G23530
A012903_01 AAACATCGCCGCAATATGGCTACTGTTCCAAAGAACACGGAACCAGGTGAGGTTACTTTAGAGAGAGCAA AT4G31210
A202663_01 GGTTTTGTGGCGGACTCAGTCGGTGCTACACTTGGCTCAGGAGCTGCATTTCTACTAGGCCGTACGATTG AT5G19070
A020054_01 TTCCATCTGGTCAACAGCTTTCTCTTGCTCGTCATTTGTACTCCCCTGAGTGCGAAGCCGCCGTCAATGA AT3G56090
At30021579 AGAATGAGAAGAAGAAGCCGATTTTGCATCTGCCATGGGCAATCGTAGCCACTCCATAATCGAAAGCTCG AT4G34160
At30020654 GCTTGTGCGCCATGATGAAAAAGAATCGAAAATCGAAGCCGAAGTGCTTTCAGCTCCCCCAAAGCTGGTG AT4G26370
A016958_01 TGGCTTAGAGTTTGACACAGCTGGTCTCACAGGAAACAGTCTGGATAGTCATAGACTTATACATTATACC AT5G38900
A024665_01 GCATCACAGGTCATGACTTTCTTTGACAATACAAATGATCTCTGGACTACACAGGCTCTCGCTGGGAAAC AT5G58800
A017031_01 TCTGGAGGAAGAGGAGGAGCTAACACGGCGGTTCCAATGTCTAGGAAACGTTTTAGGACGAAGTTTAGTC AT5G15210
A018236_01 AACCGTAGAGGTTAGAGACATTCAAGGAGAGGGTTTTCCTGAGAAACTGTCAGGTTTGGCTGATTCTGTG AT5G14600
A200132_01 AAAAGAGGACCACAAAGGCGTGTGCGTGACGTCAGTGCACAGTCGGACAAGTATTACATTGACGTCAACG AT5G18310
A010711_01 AACAGTTCATGGTACACTCCTCTGCTTACTTGTCTACCGAAACTACCGGTCAGTCCAATAGGGAAATGGC AT3G56080

Total number of rows: 28814

Table truncated, full table size 2579 Kbytes.




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