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Status
Public on Nov 04, 2008
Title
Swine Protein-Annotated Oligonucleotide Microarray
Technology type
spotted oligonucleotide
Distribution
non-commercial
Organism
Sus scrofa Manufacturer
Illumina (Oligo synthesis); University of Arizona (Array printing)
Manufacture protocol
Printing protocols available at:http://ag.arizona.edu/microarray/protocol1A.doc http://www.pigoligoarray.org/
Submission date
Oct 07, 2008
Last update date
Jan 18, 2013
Contact name
Catherine W. Ernst
E-mail(s)
[email protected] Phone
517-432-1941
Fax
517-432-0753
URL
http://www.msu.edu/~ernstc/ Organization name
Michigan State University
Department
Animal Science
Lab
Molecular Genetics
Street address
3330 Anthony Hall
City
East Lansing
State/province
MI
ZIP/Postal code
48824
Country
USA
Samples (600)
GSM327716 , GSM327717 , GSM327718 , GSM327719 , GSM327720 , GSM327721
GSM327722 ,
GSM327723 ,
GSM327724 ,
GSM327725 ,
GSM327726 ,
GSM327727 ,
GSM327728 ,
GSM327729 ,
GSM327730 ,
GSM327731 ,
GSM367489 ,
GSM367490 ,
GSM367491 ,
GSM367492 ,
GSM367493 ,
GSM367494 ,
GSM367495 ,
GSM367496 ,
GSM367497 ,
GSM367498 ,
GSM367499 ,
GSM367500 ,
GSM367501 ,
GSM367502 ,
GSM367503 ,
GSM367504 ,
GSM367505 ,
GSM367506 ,
GSM367507 ,
GSM367508 ,
GSM367509 ,
GSM367510 ,
GSM385961 ,
GSM385962 ,
GSM385963 ,
GSM385964 ,
GSM385965 ,
GSM385966 ,
GSM385967 ,
GSM385968 ,
GSM385969 ,
GSM385970 ,
GSM385971 ,
GSM385972 ,
GSM385973 ,
GSM385974 ,
GSM385975 ,
GSM385976 ,
GSM385977 ,
GSM385978 ,
GSM385979 ,
GSM385980 ,
GSM385981 ,
GSM385982 ,
GSM385983 ,
GSM385984 ,
GSM385985 ,
GSM385986 ,
GSM385987 ,
GSM385988 ,
GSM385989 ,
GSM385990 ,
GSM385991 ,
GSM385992 ,
GSM385993 ,
GSM385994 ,
GSM385995 ,
GSM385996 ,
GSM385997 ,
GSM385998 ,
GSM385999 ,
GSM386000 ,
GSM386001 ,
GSM386002 ,
GSM386003 ,
GSM386004 ,
GSM386005 ,
GSM386006 ,
GSM386007 ,
GSM386008 ,
GSM386009 ,
GSM386010 ,
GSM386011 ,
GSM386012 ,
GSM386013 ,
GSM386014 ,
GSM386015 ,
GSM386016 ,
GSM386017 ,
GSM386018 ,
GSM386019 ,
GSM386020 ,
GSM386021 ,
GSM386022 ,
GSM386023 ,
GSM386024 ,
GSM386025 ,
GSM386026 ,
GSM455940 ,
GSM455941 ,
GSM455942 ,
GSM455943 ,
GSM455944 ,
GSM455945 ,
GSM455946 ,
GSM455947 ,
GSM455948 ,
GSM455949 ,
GSM455950 ,
GSM455951 ,
GSM455952 ,
GSM455953 ,
GSM455954 ,
GSM455955 ,
GSM455956 ,
GSM455957 ,
GSM455958 ,
GSM455959 ,
GSM455960 ,
GSM455961 ,
GSM534980 ,
GSM534981 ,
GSM534982 ,
GSM534983 ,
GSM534984 ,
GSM534985 ,
GSM534986 ,
GSM535228 ,
GSM535229 ,
GSM535230 ,
GSM535231 ,
GSM535232 ,
GSM535233 ,
GSM573047 ,
GSM573048 ,
GSM573049 ,
GSM573050 ,
GSM573051 ,
GSM573052 ,
GSM573053 ,
GSM573054 ,
GSM573055 ,
GSM573056 ,
GSM573057 ,
GSM573058 ,
GSM573059 ,
GSM573060 ,
GSM573061 ,
GSM573062 ,
GSM573063 ,
GSM573064 ,
GSM573065 ,
GSM573066 ,
GSM573067 ,
GSM573068 ,
GSM573069 ,
GSM573070 ,
GSM573071 ,
GSM573072 ,
GSM573073 ,
GSM573074 ,
GSM573075 ,
GSM573076 ,
GSM573077 ,
GSM573078 ,
GSM573079 ,
GSM573080 ,
GSM573081 ,
GSM573082 ,
GSM573083 ,
GSM573084 ,
GSM573085 ,
GSM573086 ,
GSM573087 ,
GSM573088 ,
GSM573089 ,
GSM573090 ,
GSM573091 ,
GSM573092 ,
GSM573093 ,
GSM573094 ,
GSM573095 ,
GSM573096 ,
GSM573097 ,
GSM573098 ,
GSM573099 ,
GSM573100 ,
GSM573101 ,
GSM573102 ,
GSM573103 ,
GSM573104 ,
GSM573105 ,
GSM573106 ,
GSM573107 ,
GSM573108 ,
GSM573109 ,
GSM573110 ,
GSM573111 ,
GSM573112 ,
GSM573113 ,
GSM573114 ,
GSM573115 ,
GSM573116 ,
GSM573117 ,
GSM573118 ,
GSM573119 ,
GSM573120 ,
GSM573121 ,
GSM573122 ,
GSM573123 ,
GSM573124 ,
GSM573125 ,
GSM573126 ,
GSM573127 ,
GSM573128 ,
GSM573129 ,
GSM573130 ,
GSM573131 ,
GSM573132 ,
GSM573133 ,
GSM573134 ,
GSM617147 ,
GSM617148 ,
GSM617149 ,
GSM617150 ,
GSM617151 ,
GSM617152 ,
GSM617153 ,
GSM617154 ,
GSM617155 ,
GSM617156 ,
GSM617157 ,
GSM617158 ,
GSM617159 ,
GSM617160 ,
GSM617161 ,
GSM617162 ,
GSM655868 ,
GSM655869 ,
GSM655870 ,
GSM655871 ,
GSM655872 ,
GSM655873 ,
GSM655874 ,
GSM655875 ,
GSM655876 ,
GSM655877 ,
GSM655878 ,
GSM655879 ,
GSM655880 ,
GSM655881 ,
GSM655882 ,
GSM655883 ,
GSM655884 ,
GSM655885 ,
GSM655886 ,
GSM655887 ,
GSM655888 ,
GSM655889 ,
GSM655890 ,
GSM655891 ,
GSM655892 ,
GSM655893 ,
GSM655894 ,
GSM655895 ,
GSM655896 ,
GSM655897 ,
GSM655898 ,
GSM655899 ,
GSM655900 ,
GSM655901 ,
GSM655902 ,
GSM655903 ,
GSM655904 ,
GSM655905 ,
GSM655906 ,
GSM655907 ,
GSM655908 ,
GSM655909 ,
GSM655910 ,
GSM655911 ,
GSM655912 ,
GSM655913 ,
GSM655914 ,
GSM655915 ,
GSM655916 ,
GSM655917 ,
GSM655918 ,
GSM655919 ,
GSM655920 ,
GSM655921 ,
GSM655922 ,
GSM655923 ,
GSM655924 ,
GSM655925 ,
GSM655926 ,
GSM655927 ,
GSM655928 ,
GSM655929 ,
GSM655930 ,
GSM655931 ,
GSM655932 ,
GSM655933 ,
GSM655934 ,
GSM655935 ,
GSM655936 ,
GSM655937 ,
GSM952102 ,
GSM952103 ,
GSM952104 ,
GSM952105 ,
GSM952106 ,
GSM952107 ,
GSM1009232 ,
GSM1009233 ,
GSM1009234 ,
GSM1009235 ,
GSM1009236 ,
GSM1009237 ,
GSM1009238 ,
GSM1009239 ,
GSM1009240 ,
GSM1009241 ,
GSM1009242 ,
GSM1009243 ,
GSM1009244 ,
GSM1009245 ,
GSM1009246 ,
GSM1009247 ,
GSM1009248 ,
GSM1009249 ,
GSM1009250 ,
GSM1009251 ,
GSM1009252 ,
GSM1009253 ,
GSM1009254 ,
GSM1009255 ,
GSM1009256 ,
GSM1009257 ,
GSM1009258 ,
GSM1009259 ,
GSM1009260 ,
GSM1009261 ,
GSM1009262 ,
GSM1009263 ,
GSM1009264 ,
GSM1009265 ,
GSM1009266 ,
GSM1009267 ,
GSM1009268 ,
GSM1009269 ,
GSM1009270 ,
GSM1009271 ,
GSM1009272 ,
GSM1009273 ,
GSM1009274 ,
GSM1009275 ,
GSM1009276 ,
GSM1009277 ,
GSM1009278 ,
GSM1009279 ,
GSM1009280 ,
GSM1009281 ,
GSM1009282 ,
GSM1009283 ,
GSM1009284 ,
GSM1009285 ,
GSM1009286 ,
GSM1009287 ,
GSM1009288 ,
GSM1009289 ,
GSM1009290 ,
GSM1009291 ,
GSM1009292 ,
GSM1009293 ,
GSM1009294 ,
GSM1009295 ,
GSM1009296 ,
GSM1009297 ,
GSM1009298 ,
GSM1009299 ,
GSM1009300 ,
GSM1009301 ,
GSM1009302 ,
GSM1009303 ,
GSM1581765 ,
GSM1581766 ,
GSM1581767 ,
GSM1581768 ,
GSM1581769 ,
GSM1581770 ,
GSM1581771 ,
GSM1581772 ,
GSM1581773 ,
GSM1702315 ,
GSM1702316 ,
GSM1702317 ,
GSM1702318 ,
GSM1702319 ,
GSM1702320 ,
GSM1702321 ,
GSM1702322 ,
GSM1702323 ,
GSM1702324 ,
GSM1702325 ,
GSM1702326 ,
GSM1702327 ,
GSM1702328 ,
GSM1702329 ,
GSM1702330 ,
GSM1702331 ,
GSM1702332 ,
GSM1702333 ,
GSM1702334 ,
GSM1702335 ,
GSM1702336 ,
GSM1702337 ,
GSM1702338 ,
GSM1702339 ,
GSM1702340 ,
GSM1702341 ,
GSM1702342 ,
GSM1702343 ,
GSM1702344 ,
GSM1702345 ,
GSM1702346 ,
GSM1702347 ,
GSM1702348 ,
GSM1702349 ,
GSM1702350 ,
GSM1702351 ,
GSM1702352 ,
GSM1702353 ,
GSM1702354 ,
GSM1702355 ,
GSM1702356 ,
GSM1702357 ,
GSM1702358 ,
GSM1702359 ,
GSM1702360 ,
GSM1702361 ,
GSM1702362 ,
GSM1702363 ,
GSM1702364 ,
GSM1702365 ,
GSM1702366 ,
GSM1702367 ,
GSM1702368 ,
GSM1702369 ,
GSM1702370 ,
GSM1702371 ,
GSM1702372 ,
GSM1702373 ,
GSM1702374 ,
GSM1702375 ,
GSM1702376 ,
GSM1702377 ,
GSM1702378 ,
GSM1702379 ,
GSM1702380 ,
GSM1702381 ,
GSM1702382 ,
GSM1702383 ,
GSM1702384 ,
GSM1702385 ,
GSM1702386 ,
GSM1702387 ,
GSM1702388 ,
GSM1702389 ,
GSM1702390 ,
GSM1702391 ,
GSM1702392 ,
GSM1702393 ,
GSM1702394 ,
GSM1702395 ,
GSM1702396 ,
GSM1702397 ,
GSM1702398 ,
GSM1702399 ,
GSM1702400 ,
GSM1702401 ,
GSM1702402 ,
GSM1702403 ,
GSM1702404 ,
GSM1702405 ,
GSM1702406 ,
GSM1702407 ,
GSM1702408 ,
GSM1702409 ,
GSM1702410 ,
GSM1702411 ,
GSM1702412 ,
GSM1702413 ,
GSM1702414 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (14)
GSE13095 Validation of the Swine Protein-Annotated Oligonucleotide Microarray.
GSE14716 Postnatal response of the intestine in 19 d-old IUGR piglets
GSE15384 Time-course analysis of intestinal postnatal response to IUGR at 0-2 and 5 days
GSE18249 Postnatal intestinal response of IUGR piglets to high proteins before weaning
GSE21412 Transcriptional profiling during fetal skeletal muscle development of Piau and Yorkshire-Landrace crossbred pigs
GSE23351 Genome-wide linkage analysis of global gene expression of loin muscle tissue identifies putatively cis-acting candidate genes in pigs
GSE25120 Identifying putative candidate genes and pathways involved in immune responses to porcine reproductive and respiratory syndrome virus (PRRSV) infection
GSE26642 Pathology and Protective Immune Response in Pigs Infected with Porcine Reproductive and Respiratory Syndrome Virus (PRRSV) of High and Low Virulence
GSE38923 Day5-6 porcine blastocyst gene expression profile
GSE41144 Whole blood response of Pigs to infection with Porcine Reproductive and Respiratory Syndrome Virus (PRRSV)
GSE64858 Gene expression analysis of pig cumulus-oocyte complexes stimulated in vitro with follicle stimulating hormone or epidermal growth factor-like peptides
GSE69513 Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection [4 dpi]
GSE69514 Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection [7 dpi]
GSE69515 Whole blood microarray analysis of pigs showing extreme phenotypes after a porcine reproductive and respiratory syndrome virus infection
Data table header descriptions ID Oligo_ID Unique Oligonucleotide ID
SEQUENCE Oligonucleotide sequence
HGNC HUGO Gene Nomenclature Committee Abbreviation
Best_Match_Description Best sequence identity match description
GB_ACC genbank accession
SPOT_ID spot identifier
Data table ID Oligo_ID SEQUENCE HGNC Best_Match_Description GB_ACC SPOT_ID 1
10010:13638_CL2Contig1:r
ACCAGGAGGAGATTTCCAGCTATTACGGTGTCTCCGGGTTCCAGACCACTGAACACTTTCTGACTGCAGT
GNL3L
guanine nucleotide binding protein-like 3 (nucleolar)-like [Source:RefSeq_peptide;Acc:NP_061940]
2
10027:37260_34161065:f
AAGCGCTGTCTTTTAGCTCCAAGGTGGGATTATCCAGAAGGAACTCCTAACGGAGGTAGTACCCCTCTCC
No Description
3
10146:20095_CL3Contig1:f
ATCATCGAGCTCTTCGTCAAGGCTGGCAGTGATGGTGAGAGCATAGGAAACTGCCCCTTTTCTCAGAGGC
CLIC4
Chloride intracellular channel protein 4 (Intracellular chloride ion channel protein p64H1). [Source:Uniprot/SWISSPROT;Acc:Q9Y696]
4
10172:241_CL1Contig1:r
CCCAAGGAGTGACCCCAAATTTACATATACTGGAACTGAAATGCGCACAGTTGCTGAAAAGGTCGACGCC
BRCC3
BRCA1/BRCA2-containing complex subunit 3. [Source:Uniprot/SWISSPROT;Acc:P46736]
5
10266:2261_CL2Contig1:f
CCAACGTGTCAAGGGCCAAGGCCGTGCGGGCCCTGAGAGACAACCAGAGCGACATTGTCAACGCCATCAT
NACAD
No Description
6
10283:3740_CL2Contig1:f
AACGGTCTTGGATGAGCAGGTGGAAGTCGTCGGTTCTGCATGAAGGAGAAGGGAACATCAGGAGCGTGAA
VPS41
Vacuolar assembly protein VPS41 homolog (S53). [Source:Uniprot/SWISSPROT;Acc:P49754]
7
10406:7781_CL1Contig2:r
TCAAGATCCAGAGGGACTTCATGCTAAGCTTCTCCAGAGACCCCAAAGGCTACATCCAAGACCTCCTCCG
SMARCD3
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D member 3 (60 kDa BRG-1/Brm-associated factor subunit C) (BRG1-associated factor 60C). [Source:Uniprot/SWISSPROT;Acc:Q6STE5]
8
10418:3293_CL5Contig1:f
ATCTACAACCAGAACGACCCCTGGGACCCACCCGTGGTCTTTGAGGAGTTTCTTCGAAACAATGAAAACA
AOC3
Membrane copper amine oxidase (EC 1.4.3.6) (Semicarbazide-sensitive amine oxidase) (SSAO) (Vascular adhesion protein 1) (VAP-1) (HPAO). [Source:Uniprot/SWISSPROT;Acc:Q16853]
9
10557:38776_37793177:f
GGACCTTTGCTTTACTGGCTCCCCATGTGTGTTCTTGCAAGTATTATTGTCGTGGGACTTAAGGGAATGC
SLC26A7
solute carrier family 26, member 7 isoform b [Source:RefSeq_peptide;Acc:NP_599028]
10
10573:2963_CL1Contig1:r
AGAGCTATGTGTGGAACAACATGGTGAGCAAGAGGATAGAAGAGTACGGACTGAAGCCTGTCCCTGGGGA
PUS7
Probable pseudouridine synthase KIAA1897 (EC 5.4.99.-). [Source:Uniprot/SWISSPROT;Acc:Q96PZ0]
11
1069:1374_32949159:f
ATCAAGAAACTATACAGAGTTCCCGACTTCCCCTCGAAACGCCTGCCCAACTGGAGGACCAGAGGATTGG
SNX22
Sorting nexin-22. [Source:Uniprot/SWISSPROT;Acc:Q96L94]
12
10708:793_CL1Contig2:f
AGCTGGTGTATCCTCTTCTGGCCTTTACCCGACAAGCACTGAACCTGCCAGATGTGTTTGGGTTGGTGGT
FBXO7
F-box only protein 7. [Source:Uniprot/SWISSPROT;Acc:Q9Y3I1]
13
10805:13066_CL1Contig1:f
CCTTTGCCGTGTTCCCCAGCGACGGTGGCTCCCTACAGAAGAAATTAAAAGTCTGGTTCCGGATTCCAAA
HEBP1
Heme-binding protein 1 (p22HBP). [Source:Uniprot/SWISSPROT;Acc:Q9NRV9]
14
10823:45360_C0007760d20-7:f
TGTGGGGAGAGCTGAACACTGGATTGGGCTGAAAAATGAAGATGGCCAGACTTGGAAATGGTCAAATGGC
CD69
Early activation antigen CD69 (Early T-cell activation antigen p60) (GP32/28) (Leu-23) (MLR-3) (EA1) (BL-AC/P26) (Activation inducer molecule) (AIM). [Source:Uniprot/SWISSPROT;Acc:Q07108]
15
10948:5316_54534002:f
AGGGATGGATGTCGATCTTGGACGAGCCTGGAGAGTGGAAGAAGCACTGGTTTGTGCTGACTGATTCAAG
TRIOBP
TRIO and F-actin binding protein isoform 2 [Source:RefSeq_peptide;Acc:NP_619538]
16
10969:11324_CL2Contig1:r
AGGTGCCTACTACAACCTTGACTCCAAACTGAAGATGCCTGAATGGATTGGAGGCGAAAGCGAGCTCAGG
JOSD1
Josephin-1 (Josephin domain containing 1). [Source:Uniprot/SWISSPROT;Acc:Q15040]
17
11073:11669_CL4Contig1:f
TCGGGATGGGAAACGCAGATTACATGGCCGCCTTCCTGCAGGTGCTGCTGCCCTTGGCCTTTGAGTTCAA
HDAC10
Histone deacetylase 10 (HD10). [Source:Uniprot/SWISSPROT;Acc:Q969S8]
18
1109:18597_CL1Contig1:r
CCGGATGATGATCCCAGATTGCCAGCGCAGGTTGGAAGCTGCATATACCGATCTTCTGCAGTTACTAGAG
TBCA
Tubulin-specific chaperone A (Tubulin-folding cofactor A) (CFA) (TCP1- chaperonin cofactor A). [Source:Uniprot/SWISSPROT;Acc:O75347]
19
11195:8566_CL1Contig1:f
TGACTGCAAGTATGGAAGCCAAGGCCTCCTCCCAGCTGGAGAAAGAAGACAAGCCAGCTGAAACCAAGAA
LIMA1
Epithelial protein lost in neoplasm. [Source:Uniprot/SWISSPROT;Acc:Q9UHB6]
20
11207:12593_CL2Contig1:f
GGTCTGCCCCAACCCTGTGGCCACGCTGCTTGAATGGCAGGATGCCCTGAGTTTTATTCCAGTCAGTTCT
TROAP
Trophinin-associated protein (Tastin) (Trophinin-assisting protein). [Source:Uniprot/SWISSPROT;Acc:Q12815]
20736 4049 Kbytes .Supplementary data files not provided
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