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Platform GPL7078 Query DataSets for GPL7078
Status Public on Nov 14, 2008
Title HUGHES_Toronto_44K_v1.0
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Agilent
Manufacture protocol Agilent SurePrint Technology
Support glass
Coating unknown
 
 
Web link http://www.chem.agilent.com/Scripts/Generic.ASP?lPage=43127
Contributor(s) Hughes TR, Winston F, Cheung V, Chua G
Submission date Jul 21, 2008
Last update date Nov 14, 2008
Contact name Gordon Chua
E-mail(s) [email protected]
Phone 1-403-220-7769
Fax 1-403-210-8655
Organization name University of Calgary
Department Biological Sciences
Lab Chua
Street address 2500 University Drive, N.W.
City Calgary
State/province Alberta
ZIP/Postal code T2N1N4
Country Canada
 
Samples (6) GSM308193, GSM308194, GSM308195, GSM308196, GSM308201, GSM308202
Series (1)
GSE12272 Evidence that cryptic promoters occur extensively throughout the Saccharomyces cerevisiae genome

Data table header descriptions
ID
Row Row location for the feature on the microarray
Col Column location for the feature on the microarray
ProbeUID Unique integer for each unique probe in the array design
ControlType Feature control type: 0=non-control, 1 = positive control, 2 = negative control
ProbeName An Agilent-assigned identifier for the probe synthesized on the microarray
ORF Open reading frame designator
SEQUENCE The nucleotide sequence of each molecule on the array
SPOT_ID spot identifier

Data table
ID Row Col ProbeUID ControlType ProbeName ORF SEQUENCE SPOT_ID
1 124 72 26481 0 YAL001C_1_F YAL001C ATGGTACTGACGATTTATCCTGACGAACTCGTACAAATAGTGTCTGATAAAATTGCTTCA
2 63 347 13504 0 YAL001C_1370_F YAL001C CGGACAGCGATGGACAGGATATATTCTTCTGGCACGGTGAATTAAAAATTCCCCCAAACT
3 203 331 43596 0 YAL001C_2054_F YAL001C ATGCTAAGATCAAAGCTTCAGATGACGCTATCTCTAAGAAGAGTACGTCGGTCAACGTAT
4 125 331 26826 0 YAL001C_2113_R YAL001C ATACGTTGACCGACGTACTCTTCTTAGAGATAGCGTCATCTGAAGCTTTGATCTTAGCAT
5 1 339 170 0 YAL001C_2739_F YAL001C CATATTAATAGAAAGTCCTTCGACCACTAGAAATGAAATAGAGGCGTTGAAGAACGTTGG
6 40 424 8597 0 YAL001C_3424_F YAL001C ACTGATTTTGATGGCTATTGGGTCAATCATAATTGGTATTCTATATATGAATCTACATAA
7 89 321 19081 0 YAL001C_685_F YAL001C ATTGCATGGTTAGATGAAAAGGAGTACTTAAAGAAAGTGCTTGTAGTATCACCCAAGAAT
8 143 265 30663 0 YAL002W_1_F YAL002W ATGGAGCAAAATGGCCTTGACCACGACAGCAGATCTAGCATCGATACGACTATTAATGAC
9 203 133 43497 0 YAL002W_1507_F YAL002W GTTGTTCGTGTTTTGCAGCAATCTTCCAAAAAACTAGACTCAATTCCTTCTCTAGACGTC
10 144 204 30847 0 YAL002W_2260_F YAL002W GAATTGGTAAGTAGGCAATATGTTATTGATCTACTATTGGATGCTATGAAAGATACGGGA
11 156 360 33505 0 YAL002W_2319_R YAL002W TCCCGTATCTTTCATAGCATCCAATAGTAGATCAATAACATATTGCCTACTTACCAATTC
12 108 314 23162 0 YAL002W_3013_F YAL002W CAAATTCTGGACTTATTGAATCAAGACTCTAATTTTGAAGCTGCAGCTATAATTCACGAA
13 157 59 33570 0 YAL002W_3766_F YAL002W AAACCCGATGAATATTCTTGTTTAATTTGCCAGACGGAATCTAACCCAAAAATAGTATAA
14 39 311 8326 0 YAL002W_754_F YAL002W AGGTCAAAGTTGTCTCCACTAATATCACGGGAGAAAATTTCCACTAATTTGTTGAGTGTA
15 3 21 441 0 YAL003W_1_F YAL003W ATGGCATCCACCGATTTCTCCAAGATTGAAACTTTGAAACAATTAAACGCTTCTTTGGCT
16 5 403 1062 0 YAL003W_113_F YAL003W TCAAGGCTTTCCAATCTGCTTACCCAGAATTCTCCAGATGGTTCAACCACATCGCTTCCA
17 133 377 28569 0 YAL003W_225_F YAL003W AGAAGAAGATGACGATGTCGATTTATTCGGTTCCGACGATGAAGAAGCTGACGCTGAAGC
18 63 43 13352 0 YAL003W_337_F YAL003W AAGCCAGCTAAGCCAGCTGCTAAGTCCATTGTCACTCTAGATGTCAAGCCATGGGATGAT
19 154 430 33110 0 YAL003W_396_R YAL003W ATCATCCCATGGCTTGACATCTAGAGTGACAATGGACTTAGCAGCTGGCTTAGCTGGCTT
20 121 321 25961 0 YAL003W_449_F YAL003W GTTTGACCTGGGGTGCTCACCAATTTATCCCAATTGGTTTCGGTATCAAGAAGTTGCAAA

Total number of rows: 44290

Table truncated, full table size 4538 Kbytes.




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