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Platform GPL7054 Query DataSets for GPL7054
Status Public on Jul 18, 2008
Title yeast48canada (condensed version)
Technology type spotted DNA/cDNA
Distribution custom-commercial
Organism Saccharomyces cerevisiae
Manufacturer Microarray Centre University Health Network Toronto Medical Discovery Tower 101 College Street, Rm 9-301 Toronto, Ontario, M5G 1L7
Manufacture protocol 1. Acquisition of bacterial clone set - our Yeast 6.4k clone set is derived from Research Genetics Genepairs, Detailed information about the ORFs and sequences can be found at http://www.yeastgenome.org/
2. Clone set is PCR amplified and DNA purified in working 96 well plates.
3. The purified DNA is then transferred to 384 well source plates with DNA concentration ranging from .10ug/ul to 0.25ug/ul. These are used for spotting.
Microarrays are printed on UltraGAPS™ slides (Corning Inc.) using high-precision robotics. Printed arrays are processed following Corning's protocol and are ready-to-use. Microarray Layout Specifications Grid Rows12 Grid Cols 4 Rows 17 Cols 16 Grid to Grid Distance (um) 4500 Spot to Spot Distance (um) 200
Catalog number Y6.4K
Support glass
 
Description 48 subarrays (spots organised in 17 rows and 16 columns per subarray)
distributed in 12 rows and 4 columns of subarrays.
Controls are 3XSSC and Arabidopsis

The Platform data table reflects a condensed representation of the array's duplicate features.
The full, uncondensed array is deposited under GPL764.
 
Web link http://www.microarrays.ca
Submission date Jul 16, 2008
Last update date Jul 21, 2008
Contact name Javier Arroyo
E-mail(s) [email protected], [email protected]
Phone 0034-913941746
URL http://ucm.es/info/mfar
Organization name Facultad de Farmacia (UCM)
Department Microbiologia II
Lab U4-Javier Arroyo
Street address Plaza Ramon y Cajal S/N
City Madrid
State/province Madrid
ZIP/Postal code 28040
Country Spain
 
Samples (52) GSM248993, GSM248994, GSM248995, GSM249020, GSM249086, GSM249088 
Series (18)
GSE9930 Wild type 3 hour exposure to zymolyase
GSE9931 hog1 mutant 3 hour exposure to zymolyase
GSE9932 slt2 mutant 3 hour exposure to zymolyase
Relations
Alternative to GPL764 (uncondensed version)

Data table header descriptions
ID
ORF Systematic name
GENE_NAME Common name given to some genes. Empty space means there is not any common name. Controls have no information in this column
SPOT_ID spot identifier

Data table
ID ORF GENE_NAME SPOT_ID
3XSSC :::::: CONTROL
Arabidopsis :::::: CONTROL
YAL001C YAL001C TFC3:::::1:
YAL002W YAL002W VPS8:::::1:
YAL003W YAL003W EFB1:::::1:
YAL004W YAL004W :::::1:
YAL005C YAL005C SSA1:::::1:
YAL007C YAL007C ERP2:::::1:
YAL008W YAL008W FUN14:::::1:
YAL009W YAL009W SPO7:::::1:
YAL010C YAL010C MDM10:::::1:
YAL011W YAL011W :::::1:
YAL012W YAL012W CYS3:::::1:
YAL013W YAL013W DEP1:::::1:
YAL014C YAL014C :::::1:
YAL015C YAL015C NTG1:::::1:
YAL016W YAL016W TPD3:::::1:
YAL017W YAL017W FUN31:::::1:
YAL018C YAL018C :::::1:
YAL019W YAL019W FUN30:::::1:

Total number of rows: 6220

Table truncated, full table size 173 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary data files not provided

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