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| Status |
Public on Oct 31, 2007 |
| Title |
JCVI PFGRC Staphylococcus aureus array v2 |
| Technology type |
spotted DNA/cDNA |
| Distribution |
non-commercial |
| Organism |
Staphylococcus aureus |
| Manufacturer |
JCVI PFGRC |
| Manufacture protocol |
Array Type : ss_cdna (amplicons),Surface Coating: Aminosilane,Printing Buffer(s): DMSO,Arraying Machine(s): Lucidea,Oligo Replicates : 3x
Oligos Designed : 2709 ,Controls: 40 A. thaliana (amplicons) and 500 A.thaliana (70-mers).
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| Support |
glass |
| Coating |
aminosilane |
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| Description |
This set includes 2709 elements on array, has 9747 spots distributed in 72 grids.
This is a condensed template of triplicated features of PFGRC/TIGR Staphylococcus aureus version 2 array.
For full template information please refer to: http://pfgrc.jcvi.org/descriptionPages.shtml
http://pfgrc.tigr.org/slide_html/annotation_index/S_aureus_index_2.shtml
The GAL Annotation File (GPL6059.gal) is linked as a Supplementary file at the foot of the record.
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| |
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| Web link |
http://pfgrc.jcvi.org/descriptionPages.shtml
|
| Contributor(s) |
PFGRC J |
| Submission date |
Oct 29, 2007 |
| Last update date |
Nov 08, 2009 |
| Contact name |
Arunachalam Muthaiyan, Brian Wilkinson |
| E-mail(s) |
[email protected], [email protected]
|
| Phone |
309-438-7244
|
| URL |
http://www.bio.ilstu.edu/Wilkinson/
|
| Organization name |
Illinois State University
|
| Department |
Biological Sciences
|
| Lab |
Microbiology
|
| Street address |
Julian Hall
|
| City |
Normal |
| State/province |
IL |
| ZIP/Postal code |
61790 |
| Country |
USA |
| |
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| Samples (6) |
GSM240779, GSM240783, GSM240784, GSM240845, GSM240846, GSM240847 |
| Series (1) |
| GSE9494 |
Transcriptional Profiling of Daptomycin Induced Staphylococcus aureus |
|
| Data table header descriptions |
| ID |
|
| row |
The overall row position, on the slide, of the spot |
| column |
The overall column position, on the slide, of the spot meta_row - The row position of the block containing spot |
| meta row |
The row position of the block containing spot |
| meta column |
The column position of the block containing spot |
| sub row |
The row position in the block of the spot |
| sub column |
The column position in the block of the spot feature_name - ORF designation/Feat name |
| ORF |
locus tag |
| SPOT_ID |
spot identifier (control, empty, etc.) |
| feature name |
TIGR ORF ID |
| strain |
Strain name |
| common name |
Common name |
| well id |
A unique identifier for the sample |
| size |
Amplicon size |
| amplified |
PCR amplification result (1=success, 0=failure) |
| verified |
Verified PCR product size on a gel (1=expected, 0=unexpected) |
| Data table |
| ID |
row |
column |
meta row |
meta column |
sub row |
sub column |
ORF |
SPOT_ID |
feature name |
strain |
common name |
well id |
size |
amplified |
verified |
| SA0628 |
1 |
1 |
1 |
1 |
1 |
1 |
SA0628 |
|
ORF00116 |
COL |
conserved hypothetical protein |
5861 |
305 |
1 |
1 |
| SA0709 |
1 |
2 |
1 |
1 |
1 |
2 |
SA0709 |
|
ORF00208 |
COL |
conserved hypothetical protein |
5940 |
306 |
1 |
1 |
| SA0109 |
1 |
3 |
1 |
1 |
1 |
3 |
SA0109 |
|
ORF02565 |
COL |
hypothetical protein |
8061 |
308 |
1 |
1 |
| SA0768 |
1 |
4 |
1 |
1 |
1 |
4 |
SA0768 |
|
ORF00268 |
COL |
conserved hypothetical protein |
5997 |
309 |
1 |
1 |
| SA2168 |
1 |
5 |
1 |
1 |
1 |
5 |
SA2168 |
|
ORF01815 |
COL |
conserved hypothetical protein |
7385 |
322 |
1 |
1 |
| SA0759 |
1 |
6 |
1 |
1 |
1 |
6 |
SA0759 |
|
ORF00259 |
COL |
PTS system, fructose-specific IIABC component, authentic frameshift |
5989 |
325 |
1 |
1 |
| SA1753 |
1 |
7 |
1 |
1 |
1 |
7 |
SA1753 |
|
ORF01330 |
COL |
universal stress protein family |
6972 |
328 |
1 |
1 |
| SA1995 |
1 |
8 |
1 |
1 |
1 |
8 |
SA1995 |
|
ORF01605 |
COL |
conserved hypothetical protein |
7214 |
330 |
1 |
1 |
| SA2516 |
1 |
9 |
1 |
1 |
1 |
9 |
SA2516 |
|
ORF02192 |
COL |
gluconate operon transcriptional repressor |
7731 |
304 |
1 |
1 |
| SA0009 |
1 |
10 |
1 |
1 |
1 |
10 |
SA0009 |
|
ORF02453 |
COL |
seryl-tRNA synthetase |
7963 |
306 |
1 |
1 |
| SA2327 |
1 |
11 |
1 |
1 |
1 |
11 |
SA2327 |
|
ORF01989 |
COL |
formiminoglutamase |
7543 |
308 |
1 |
1 |
| SA2273 |
1 |
34 |
1 |
4 |
1 |
1 |
SA2273 |
|
ORF01932 |
COL |
formate dehydrogenase accessory protein FdhD |
7489 |
303 |
1 |
1 |
| SA1339 |
1 |
35 |
1 |
4 |
1 |
2 |
SA1339 |
|
ORF00883 |
COL |
conserved hypothetical protein |
6562 |
305 |
1 |
1 |
| SA1294 |
1 |
36 |
1 |
4 |
1 |
3 |
SA1294 |
|
ORF00835 |
COL |
metallo-beta-lactamase family protein |
6517 |
307 |
1 |
1 |
| SA0630 |
1 |
37 |
1 |
4 |
1 |
4 |
SA0630 |
|
ORF00120 |
COL |
amino acid permease |
5863 |
309 |
1 |
1 |
| SA2590 |
1 |
38 |
1 |
4 |
1 |
5 |
SA2590 |
|
ORF02274 |
COL |
glyoxalase family protein |
7805 |
321 |
1 |
0 |
| SA1393 |
1 |
39 |
1 |
4 |
1 |
6 |
SA1393 |
|
ORF00941 |
COL |
transcriptional antiterminator LicT, putative |
6616 |
324 |
1 |
1 |
| SA2631 |
1 |
40 |
1 |
4 |
1 |
7 |
SA2631 |
|
ORF02318 |
COL |
conserved hypothetical protein |
7846 |
326 |
1 |
1 |
| SA2428 |
1 |
41 |
1 |
4 |
1 |
8 |
SA2428 |
|
ORF02098 |
COL |
dethiobiotin synthase |
7643 |
329 |
1 |
1 |
| SA1502 |
1 |
42 |
1 |
4 |
1 |
9 |
SA1502 |
|
ORF01063 |
COL |
conserved hypothetical protein |
6721 |
304 |
1 |
1 |
Total number of rows: 3174
Table truncated, full table size 273 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL6059.gal.gz |
111.8 Kb |
(ftp)(http) |
GAL |
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