GEO help: Mouse over screen elements for information.
Status
Public on Oct 31, 2007
Title
Vibrio parahaemolyticus RIMD2210633 5k microarray
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Vibrio parahaemolyticus RIMD 2210633 Manufacturer
Molecular Gene Technics, Department of Genetic Resources Technology, Faculty of Agriculture, Kyushu University, Fukuoka, Japan.
Manufacture protocol
PCR products were prepared for all the protein-coding genes on the V. parahaemolyticus RIMD2210633 genome (4,832 genes in total).Principles for the probe design were average 500bp in length and 1 probe for each gene. 4,866 probes were amplified and each probe was spotted onto poly-L-Lysine coated glass slides (SD10011; Matsunami Glass Ind., Osaka Japan) using SPBIO (Hitachi Software Engineering, Tokyo, Japan).
Support
glass
Coating
other
Contributor(s)
Izutsu K , Tashiro K , Kuhara S , Iida T Submission date
Oct 29, 2007
Last update date
Oct 31, 2007
Contact name
Kaori Izutsu
Organization name
Osaka University
Department
Research Institute for Microbial Diseases
Lab
Laboratory of Genomic Research on Pathogenic Bacteria
Street address
1-1 Yamadaoka
City
Suita
State/province
Osaka
ZIP/Postal code
565-0871
Country
Japan
Samples (86)
GSM252054 , GSM252055 , GSM252056 , GSM252057 , GSM252058 , GSM252059
GSM254457 ,
GSM254458 ,
GSM254459 ,
GSM254460 ,
GSM254461 ,
GSM254462 ,
GSM254463 ,
GSM254464 ,
GSM254465 ,
GSM254466 ,
GSM254467 ,
GSM254468 ,
GSM254469 ,
GSM254470 ,
GSM254471 ,
GSM254472 ,
GSM254473 ,
GSM254474 ,
GSM254475 ,
GSM254476 ,
GSM254477 ,
GSM254478 ,
GSM254479 ,
GSM254480 ,
GSM254481 ,
GSM254482 ,
GSM254483 ,
GSM254484 ,
GSM254485 ,
GSM254486 ,
GSM254487 ,
GSM254488 ,
GSM254489 ,
GSM254490 ,
GSM254491 ,
GSM254492 ,
GSM254493 ,
GSM254494 ,
GSM254495 ,
GSM254496 ,
GSM254497 ,
GSM254498 ,
GSM254499 ,
GSM254500 ,
GSM254501 ,
GSM254502 ,
GSM254503 ,
GSM254504 ,
GSM254505 ,
GSM254506 ,
GSM254507 ,
GSM254508 ,
GSM254509 ,
GSM254510 ,
GSM254511 ,
GSM254512 ,
GSM254513 ,
GSM254514 ,
GSM254515 ,
GSM254516 ,
GSM254517 ,
GSM254518 ,
GSM254519 ,
GSM254520 ,
GSM254521 ,
GSM254522 ,
GSM281581 ,
GSM281582 ,
GSM431594 ,
GSM431595 ,
GSM431596 ,
GSM431597 ,
GSM431598 ,
GSM431599 ,
GSM540708 ,
GSM540709 ,
GSM540710 ,
GSM540711 ,
GSM540712 ,
GSM540713 Series (4)
GSE9968 Examination of growth mode dependent replication dynamics and expression levels for Vibrio parahaemolyticus RIMD2210633.
GSE10020 Genomic comparison in Vibrio parahaemolyticus strains by comparative genomic hybridization.
GSE17242 RIMD 2210633 wild type versus vtrA or vtrB mutants
GSE21666 Vibrio parahaemolyticus gene expression affected by 0.04% bile
Data table header descriptions ID ORF target ORF; locus tag
SPOT ID spot ID
FUNCTION function of target ORF
SEQUENCE probe sequence
Data table ID ORF SPOT ID FUNCTION SEQUENCE 1
VP0001 VP0001
MioC protein
GCGCTCGATATTCTCTTTTAACCATGCTTCTGCAGCATCTTCTGGGACGTCATGAGCCAGTACATCAATCAACAAGCAATCTGCAATCGGCGTTGCGCCAATATCTTCTAACAAGTTGTAAGCGTGCTTACCGGCAGCGCAGAACGTATCGTAGCTCGAATCACCAATCGCAATGACTGCAAACTTCACGTCGGCCATCTTAGGTGGCGTATTTTGCAATGCTGCGATGAAAGGTTGAATATTGTCTGGATATTCCCCCGCACCGTGGGTGGAGGTGATCACAAGCCAAGTCCCTTGGTTATCGATCTCGTCTAATGACGGTTGGTTGTGGATCGTGGTTTCAAATCCTTGTTCAACGAGCAGATCGCTCAGGTGATCACCGACGTATTCCGCACCACCAAGAGTGCTACCTGTAATAATGTGG
2
VP0002 VP0002
thiophene and furan oxidation protein ThdF
CGATGGCGGCTTCAACATAAATGCGCAAATGGATTAGCGATTCCACCAGCGTCTGGATGCGCTGAGAGAACTGTCCTTGTAGCGATTGTAGAGCGGATTTTGCTGCTTCTTCTGAGCTAGCATCAATCAGGTCGGCAATCGCTTCTGCCTGAGTCAAGTCCATCTTGTCGTTCAAGAACGCACGTTCCGAGAACTCACCAGGACGGGCTGCTCGTACGCCAGCTATGCCCAGAATACGTTTAATCAGCATATCCATTACCACAGGGCCACCGTGACCTTGAAGTTCTAATACGTCTTCGCCCGTGAACGAGTGCGGGTTAGGGAAGTACAGTGCAATGCCTTGGTCGAGCACCGTGCCATCTTCGGCTTGAAACGGCAGGTATTCAGCGTAACGCGGTTTTAGAGTTTTCCCTGTGACTTCCAATGCCACTTGGTTGGCCTTAGGGCCTGAAACACGAATAATGCCGACACCACCACGACCTGGTGCAGTAGCTTGAGCGACAATCGTATCTGTAGTCAT
3
VP0003 VP0003
inner membrane protein, 60 kDa
GCTGCCGCGTTTTAATACGTAAGTTTTTGTGTATTCGATGCCGTTTGCAGTAAATGTCATCGGAACGCGTAGTTCGTCTTGACCGTCAGCTAGAGTGAAGCTGTCTGCGCTCACATTGTAGTGAGGACGGTTAGAGCTGCTTAGATCGATACCTTGAGGACCAACAAGACCGCTTTGGGCGATGAATTGATGACCTTGTGTGTCTTTTAGCAGAACGAATGGGTCTGATGAATCAAGTTCAGCAGAGTATTGGTTTAAGTCGGCATGTACCACATCGCCACCAACGGTGTCGATCGACAGAGTTAAAACATCAGTCGTTACTGTGATAGTTTTTGCAGAAGCTTGCTGTTGACCAGGAACTGGGTCCAGCTCATCAGCAAAAGATGGTGCAGGTAGACTGCTGCTTGATTGAGCCTGTTCAACCGCTTGAGGTGCTGGATTCTTTGCGACTTGCCATTGTTGAAATAGCAAGAAAGAAACCAGTGCCAGAGCGATGAGCAGGATATTACGTTGAGAATCC
4
VP0004 VP0004
ribonuclease P protein component
TATCCACGTGAAGGGCGAGACAGGCGTTGCCATAGCTTATCAAACAACTTAAAAATTTCCTCATTGCTTAAATCTTGCGCGCTTTTCTTCGCGATCACAACAAAATCTTTGTTTGGAAGCTGATGTTGAGAGTTACGAAAGCTTTCACGAGCCAAACGCTTAAAGCGGTTACGACCGACAGCAGTTTTGATTTGCTTTTTCGGAACAGCTAAACCTAATCGTGGATGAGAAAGTTTGTTATTGCGAGCAATGATGGTGAAATGAGGCGAGCCAGCTCGGTGAGCTTGCTGGAAGACGTTTTGATAATGCTCGGGAGTTAACAAGCGTAACTCCCGATTAAACGCGTACGTGTTCAA
5
VP0005 VP0005
ribosomal protein L34
TTATTTTGATAGGCGCGCACGGCCTTTTGCACGACGTGCGTTGATAACTTTACGACCGTTCTTAGTTGCCATGCGAGCACGGAAGCCGTGAGTACGCTTGCGCTTTAGAACTGTAGGTTGAAAAGTGCGTTTC
6
VP0006 VP0006
amino acid ABC transporter, ATP-binding protein
ACTTCACCGACCCATTCCGGATCCAGTGCGGAAGTTGGCTCATCAAAAAGTAACAGTTCTGGCTGTAACGCCATAGCGCGGCCGATACCGACACGCTGCTGCTGGCCACCAGATAGAGCTGCCGGGTAGCTATCACCTTTCTCGCCAAGGCCAATATCATCCAGAATCTGCTGTGCACGAGTCAGAGCTTCCTGTTTCTTCCAGCCACGCACGGTAATCAAACCTTCGGCAATATTCTGGCGAGCCGTCATGTGCGCAAAAAGGGCATAGTTTTGGAAAACAAACCCAGTACGGCGACGCAGCGCCAAGACTTCGGCTTTCGTGTGCTTTTGTGTATCGACAGAGATGTCGTCGATAGTGATACGACCTTCGTCGGCTTGCTCAAGGAAGTTAACGGTGCGCAACAGGGTCGACTTACCTGTCCCACTTGAGCCGATAATCACGATGATCTCACCCTGTTTGATATCGAGATCAATGCCTTTCAGGACTTCAGTATCGCCAAAGCGCTTGTGGATATTTTC
7
VP0007 VP0007
amino acid ABC transproter, permease protein
CTGCGCTTTAGCCATGATTTCTGCCACGCCAAGCGTGAAGGCGAGGGAAGTCGACTTAATCATATCAATGAAGTAGTTCATCAATGAGGGCAGTGCTACTCGTGTTGCTTGTGGCAGAATCACGCGACGCATCGCTTGTGGCGTTGTCATGCCGACCGATAGGCTCGCTTCCATTTGGTTGCGATCAATACCGATGATTGCAGCACGAATACTCTCGGCCATATAAGCGGCAAAGTGCAACGTTAAACCAATCACTGCGGCAGAAAATGCATCGATACCCACCATCACAGGGAAGATTTGTGGCAAGCCGTAATAAAGCAAGAAAAGTTGTACTAACAGTGGGGTACCACGGAAGAAGCTGATGTACAGTTGACTCAATTGGTCGAGAACTGGCAGCTTAAATACGCGAATGTTCGCCAAAATGACGGCTAAAATCAGTGAAAAGACCAAGCCCCATGTGGCCATTTCCATGGTTGTGCCAAGATATTTGAGCAATATCGGCAGCAGTTCCAACATGTAATT
8
VP0008 VP0008
amino acid ABC transporter, periplasmic amino acid-binding portion
CATCACGAAAGCGTCTGCACGGCCAAGCGCAACATCATGCTCGATACCAGTGTCGTAAGTTTTGATGTTGATTTTGCCATCTTTGTCGTATTGGCGTAGTAACTGCTCAAAGTTAGAACCTAGGTTAACCGCAACGGTTTTGCCTGCTAGATCGTCTACACCTTTGATGCTGTCGTTGCCTTTACGTACCGTGATTTGCGCGCCGTCGATCACATAAGGGTCTGCAAACAGGTATTTCGCTTTGCGCTCATCTGTCATGGTGATTTGGTTTGAGATTGTATCGATGCGGCCAGTTTCTAAAAGACCAAACAAACCTGAGAAGTTCGACGTCACGTATTCGATCTTGTAGTCGTTACGCTTACCGATCTCATCCCACATATCCACCTCAAAGCCTTGTAGCTTGTCTTGCTTCACGAAAGTGAATGGGAAGTAACGGCCAGACATGCCCACCTTGACTTCAGTTGCGGCTTGAACAGTCGCGGCAGATAGTGCGATGGCTGCAACGGCAACCTTAACCCAGTTT
9
VP0009 VP0009
hypothetical protein
AACGATCGAATCAAAGCGAAAGGATCGAAAAAAGAGGCGCTGGAAAGAAAATAATACACAGAGTTATCACCAATCTGTCGATCTCGCTAAATTTGCCCAAATGTGGATCTATGTGTGGGCAAATTTGGGGCAAGGTGTGTTG
10
VP0010 VP0010
hypothetical protein
GGATCTATGTGTGGGCAAATTTGGGGCAAGGTGTGTTGATCTCACCAAGTTTGGCGAAATAATTGTGAATAACTTAGATCTTATTCACTTGATCGTCGATCAATTGCTGGCGATCTTGGTTATCAACAGGTA
11
VP0011 VP0011
chromosomal DNA replication initiator DnaA
TCATCTTCGCTTTGGCTGCAATGTTTGCAGCAGCTTCAAGAAGAGCTACCAGCTACAGAATTCAGTATGTGGGTTCGTCCGTTACAAGCGGAGCTCAATGACAATACTCTCACTCTATTCGCGCCAAACCGCTTTGTGTTGGATTGGGTGCGTGATAAGTATCTGAACAGCATTACTCGTTTACTGCAGGAATACTGTGGTAACGACATCCCGAATTTACGCTTTGAAGTGGGCAGTCGCCCAGTTTCTGCGCCTAAGCCAGCACCGACACGTACGCCGGCGGATGTGGCTGCGGAATCTTCAGCGCCTGCGCAGTTGCAAGCACGTAAACCTGTGCACAAAACATGGGATGACGACCCTCAAGCGATTGCAGCGATCAATCACCGCTCAAACATGAACCCAAAACATAAGTTCGACAACTTCGTTGAAGGTAAATCGAACCAACTGGGTTTGGCTGCGGCGCGTCAGGTATCGGATAACCCAGGAGCTGCCTACAACCCACTGTTCCTTTACGGTGGTACT
12
VP0012 VP0012
DNA polymerase III, beta chain
ATCAAACCGCTACAACAGGTTTCGGGCGCTTTGGGTGGCCGACCAACCCTGCCTATTTTGGGCAACCTACTGATTAAAGTAGAAGAGAACGTGCTATCAATGACCGCGACTGACCTAGAAGTGGAATTGGTGAGCAAAGTGACTCTAGAAGGGGATTTCGAAGCGGGTAGCATTACCGTTCCTTCGCGTAAGTTTCTCGATATTTGCCGTGGCTTGCCAGACGATGCGATCATCACTTTTGTGTTAGAAGGCGATCGCGTGCAAGTTCGTTCTGGTCGCAGCCGTTTCTCACTGGCAACGCTACCAGCGAATGACTTCCCGAACATTGAAGATTGGCAAAGTGAAGTTGAAGTGTCACTGAGCCAAGCGGACCTGCGTACGCTTATCGACAAAACTCAGTTCTCGATGGCAAACCAAGACGTACGTTACTACCTCAACGGTATGTTGTTTGAAATCGATGGCACTACACTGCGTAGTGTGGCGACCGACGGTCACCGTATGGCAGTATCGCAAACTCAACTAG
13
VP0013 VP0013
RecF protein
GCCTCTTTCTCGTCTCATCATTCAGCAGTTTCGCAACATTAAAGCCTGTGATATTCAGTTATCAGCAGGCTTTAACTTTCTTATTGGACCGAACGGTAGCGGCAAAACTAGTGTCCTAGAAGCGATTTATTTACTCGGGCATGGTCGCTCATTCAAAAGCTCTCTCACTGGTCGTGTGATTCAAAATGAGTGTGATGAACTGTTTGTTCATGGTCGTTTTTTGAACTCGGATCAATTTGAGCTACCTATCGGCATTAATAAGCAGCGCGATGGCTCGACAGAGGTTAAAATAGGCGGTCAATCTGGGCAAAAATTGGCGCAATTGGCGCAAGTGTTACCGCTGCAGTTGATACATCCAGAAGGGTTTGATTTACTGACGGATGGTCCAAAACATCGCCGTGCATTCATCGATTGGGGCGTGTTTCATACCGAGCCAGCATTTTATGATGCATGGGGTCGTTTTAAGCGTCTCAACAAACAGAGAAACGCGTTGTTGAAGACCGCGAGTAGCTATCGTGAGCTC
14
VP0014 VP0014
DNA gyrase, subunit B
TCGAGTATTAAGGTACTGAAGGGTCTGGATGCGGTACGTAAGCGTCCAGGTATGTACATCGGGGACACGGACGACGGCACCGGCCTTCACCACATGGTTTTCGAGGTGGTGGATAACTCAATTGATGAAGCGTTGGCAGGTCACTGTAAAGACATCGTTGTGACAATTCATGAGGACAACTCGGTTTCCGTTAGCGATGATGGTCGTGGCATTCCAACAGAAATGCACCCAGAAGAAAAAGTATCAGCAGCAGAAGTTATCATGACCGTACTGCACGCTGGTGGTAAGTTCGATGATAACTCGTACAAAGTATCAGGCGGTCTTCACGGCGTGGGTGTTTCGGTAGTAAACGCACTGTCAGAAAAAGTGGTACTAACCATCCATCGTGGCGGTCATATCCACACGCAAACTTACCGTCATGGTGAGCCTGAAGCGCCTCTAGCGGTTGTGGGTGATACGGATAAAACCGGTACACAAATTCGTTTCTGGCCAAGTGCAGAAACTTTCTCTA
15
VP0015 VP0015
hypothetical protein
TTGCCATTTTGTCCGCTTGAGTGCTTTTGCTTTCTTTTTCCTGCTCGCTATAGTGCTGTAGAGCTTTCCAATCATACGAGGTTAGAAAACATGGTGACGATTTTCCTGAACT
16
VP0016 VP0016
hypothetical protein
ATGTTTGAACGCTGGTTCACTGCGTACTGCTTGGCGCTGCGAACTTGGTGGTTAACCAGTCGCTTTTTAACCTATCAATCACCACTAAGATTACTGTCGCTGTTTGAAGCCTACGAACAGCAAACCCAGTGTCGCAACTTAGCCCGAATTGCGATTGGCGACACCGTTCGCTTAGTGGATCTTGACCGCTCCTATCAATATCGCATGACGTTAGTTGATTCACGTAAGAGCCAACCTCTTGCGGGGATGCTAGCTGTTGATTCGTACTTAGGTTCCCGATTGTTGGGGAGCTCTCAGGATGAGGTCTTAGAACTCGAGATATTCAACCAGCGCCGCTGCTTTGTGATTACCGAAATCATTCATCAATCACAGCCGCCAACACCGCATCTGGTGTGTAGCTGTATGTTATGTC
17
VP0017 VP0017
hypothetical protein
GACAAGAAGCAACCCCAGTTAAGCTTGAAAGAAAAACGTAAGTTGAAGCAAGAGAAAGCGGCCGAACAAGGAATGGTGAAAGCGCGTAAACCATCTCGCAAATAA
18
VP0018 VP0018
16 kDa heat shock protein A
ATGCGTAACGTAGATTTCTCACCACTATACCGTAATGCAATTGGCTTTGATCGTCTGCTAAACCTGATGGAAGCGAATACAGCGAAAAATACTTCTGGCGGTTACCCTCCGTACAACATCGAGCAAAAAGATGAGCACAACTACCGTATTACTATGGCAGTTGCTGGTTTCTCTGAAGACCAACTCGATCTAACTCAAAATGAAAACATGTTGATCGTGAAGGGCGAGCGTAAAGCCGAAGAAGGCAAAAACTACGTGTACCAAGGCATTGCAGAGCGCGATTTTGAACGTAAGTTCCAACTAGCGGACTATGTAAAAGTGACTGGCGCTTCAATGGAAAACGGCCTATTACACATTGACTTGGTTCGTGAAATTCCAGAAGCAATGCAACCACGCAAAATTGCTATCGGTGGCAACAACCTGCTAGAAAGCAACT
19
VP0019 VP0019
valine-pyruvate aminotransferase
GGGCGAGATGCACAAATTGCTGCGACGGAGTCATCGACGGTGAGCTTTTCAAAATCAACGTGATATTTGAATAGGCCGTTGTCGAGTAGCTCGATTTCTGGATGGTACGAAACAAAAATGTCTTCATCGATACCTGCATCACCGTAGCCAATGTATTCCGGTGCGATAGGCAACAGGACTTTTTTGTGCGAACCATCTGGCTGCTGACCAGCAAACAAATTAAATAGGTAGAAGAACCCGCTTTGGCTGCCATTCGTCAGGCTAATATTCTTCTCACTGATGTCCCAGCCGTATGTTTCACGAAACAGCTGTGCGAGCGCTTTGACGAACACGTCTTTACCCTGAGGGCCATCATAATTAGTGAGCGCGGCGACGAGTTCGCCACTGGCGAGCATTTCTTCACTGGCTTGGTGAAAGTAATCGAGCATGGCAGGAATGGCGGCCGGGTTACCCCCACCGAGCATGATGGCACCTGGCGTGCGTAGGCCATCATTCAAATCGTCCATTAACTGCGTAATACCTG
20
VP0020 VP0020
alpha-amylase
GCTCATCGGGCCTGGTTGCATGGTTACGCTGCCATTGGCGACGGTGGCTTCTTGCCCGGTTAAGGCGTCACGAACAACAGTGCCATCAGTAAAGGTTTGGGCTACGTTGATGGTTTTAGCTGTGTCGGTTGCAACAGGGCAAGAATAGGTGATGTCCTGACTTTGTTTTGGTTTGATTTTAACGGTTAGCTCATTGGTGTCTGGATTGAGCGTGAAGAGGTAGGTATTGGCTTTGAAAATGCGCAGCGGCATAGATGTGTCGGTTGCACAGTTATCCATTTTTAATGGTGTATTGAATTTGATGCGACTTTCTTCCGCTAGCGCAAAGCTGTTGCCACAGGTTTGTTTGCTGTCGGCAATGGTAAAGGTGTAGTTGCCTTTTTCTAGTTTTTGCTCTGCGACGAGTAAACCGTCTGAGTTTGGTTCGAAGACGGCAGTATCGTCTCCAACGCTTAATACGATGGCATTTTCTGGAATTTGGCTGCAGGCGCCCAGTAGGCCGATAGAGAGTGCGAGAATTGTT
4866 2381 Kbytes .Supplementary data files not provided
Less...
More...