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Platform GPL5819 Query DataSets for GPL5819
Status Public on Sep 25, 2007
Title NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (6 of 8)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number B3933-06-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 6 of 8 Array 6 of 8 chr11 16,555,051 134,451,854
 
Submission date Sep 07, 2007
Last update date Oct 26, 2010
Organization NimbleGen Systems, Inc.
E-mail(s) [email protected]
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (1) GSM228521
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier. Used to identify a probe sequence within a design.
SEQ_ID The NimbleGen sequence identifier.
GENOME_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.
GB_RANGE RefSeq accession with probe start and end coordinates

Data table
ID SEQ_ID GENOME_COUNT LENGTH GC SEQUENCE GB_RANGE
CHR11P016555051 chr11 1 59 0.39 TCTGGACTGTAGTGTGATATGCCAATAGGTTTCTGCATTAAGTTCGACATCAATATGGT NC_000011.8[16555051..16555109]
CHR11P016555717 chr11 1 60 0.4 TCTGGGTTTGTTTGCTTACTATAGCCTCCCTAGTATGTGTGAAGTAGTTACTCATTGTGA NC_000011.8[16555717..16555776]
CHR11P016556497 chr11 1 59 0.31 TTGAACTTTACTACTTAGCAATTGAAACTAATTTTATGATAGCCTGAAGTTGCTGACTA NC_000011.8[16556497..16556555]
CHR11P016557168 chr11 1 61 0.36 AATCCAATGACAACCACACTAGTTAGTTTCAGAAATCAGCTAGCTACATTAATTCACCACA NC_000011.8[16557168..16557228]
CHR11P016557858 chr11 1 56 0.36 AAACAAAATTGCTACGAACAAGCGGTGTATGTCTTTTAGTGGACAAATACACTCAT NC_000011.8[16557858..16557913]
CHR11P016558503 chr11 1 56 0.36 ACTGAGCATGTACAAGGTAAATAGGTAATGTTTAGGCCCAAATATAGGTTCAGAAA NC_000011.8[16558503..16558558]
CHR11P016560632 chr11 1 63 0.33 CAAGCCTTGTGGATATATGAATAAATGCAAGCTAAATGTTAGCATGCTCAACAAAGTTTCTAA NC_000011.8[16560632..16560694]
CHR11P016562762 chr11 1 50 0.48 GCCTTCAAAAAGGAACCTTCTGGGACCTAGTGGTCGAGCCTATAATTCCT NC_000011.8[16562762..16562811]
CHR11P016563474 chr11 1 52 0.35 AGCACTTATATGTACTCATTTAACCCTTAAAACAACCCTAAGAAGTAGGTAC NC_000011.8[16563474..16563525]
CHR11P016564170 chr11 1 58 0.34 GCTCTAAAATTGAAATCTAAGCAATAACCTTCAGGCTGAAACGATTACTAAGTGCTTA NC_000011.8[16564170..16564227]
CHR11P016564866 chr11 1 55 0.31 GATAATGGGTTATCAAATAGAAATGAATTACCTAACTGGTCCAAAGGAAAGATAA NC_000011.8[16564866..16564920]
CHR11P016565523 chr11 1 59 0.34 GAGAGCTTACAACATATCAAGTACTGTTCCAAGTGTATTAGCTTAATAAAACCTCTCAA NC_000011.8[16565523..16565581]
CHR11P016566268 chr11 1 61 0.38 AATTCCTAGCATTTGTCACTTTAGAAGGCACAGTGGACATGGTGCTTGAAAGTTCTATATA NC_000011.8[16566268..16566328]
CHR11P016567698 chr11 1 67 0.36 TACAACTAGTAGTAGCTCAATAGCAGGCATATTACAGGATAGAAACAATGATGATCCATGCATATCT NC_000011.8[16567698..16567764]
CHR11P016568323 chr11 1 65 0.37 TCAGGTAGGACGCTTGCTTTTCAGATGAATGAATGTACATATTTCTCAACATGCCTCAGTTTATA NC_000011.8[16568323..16568387]
CHR11P016569756 chr11 1 53 0.34 ATTCTAACCTGTTTAGTGATGTTCCAAAAAGTTTCAACAGGTTTTGAGTCCAT NC_000011.8[16569756..16569808]
CHR11P016570501 chr11 1 60 0.38 GTTTCCTACCTTCACTCCAATCAATCAAGGAAGATACCAGCTATAGGTTACTATGTGATA NC_000011.8[16570501..16570560]
CHR11P016571106 chr11 1 53 0.42 AAGCAGAGACCAGCTATGGCTCTCGGTAGTGAAATTATAGATACTGGAGTTAT NC_000011.8[16571106..16571158]
CHR11P016571806 chr11 1 62 0.39 TATGAACCAAACAAGGTACTAAGTGTGTTATGCACATCATCTCCTCAACCTTCACAATATCC NC_000011.8[16571806..16571867]
CHR11P016572585 chr11 1 60 0.35 CCTCAATATATCTACTTTCATTGTGCATTGTTATAGTGGGAAAGGACTACAGCTAAGAAA NC_000011.8[16572585..16572644]

Total number of rows: 385573

Table truncated, full table size 45485 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5819_2006-07-27_HG18_WG_CGH_6of8.ndf.gz 20.6 Mb (ftp)(http) NDF
GPL5819_2006-07-27_HG18_WG_CGH_6of8.pos.gz 2.9 Mb (ftp)(http) POS

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