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Platform GPL5814 Query DataSets for GPL5814
Status Public on Sep 25, 2007
Title NimbleGen Homo sapiens HG18 Whole Genome CGH Tiling Set (1 of 8)
Technology type in situ oligonucleotide
Distribution commercial
Organism Homo sapiens
Manufacturer NimbleGen
Manufacture protocol see manufacturer's web site
Catalog number B3933-01-01
 
Description Source: UCSC
Build: HG18, NCBI 36
Probe Length: 50-75mer
Median Probe Spacing: 713bp
Probes per Array: 385,000
Feature Size: 16um x 16um
Array Dimensions: 17.4mm x 13mm
Overall Slide Dimensions: 1" x 3" (25 x 75mm)

HG18 WG CGH 1 of 8 Array 1 of 8 chr1 58,140 247,189,712
 
Submission date Sep 07, 2007
Last update date Oct 26, 2010
Organization NimbleGen Systems, Inc.
E-mail(s) [email protected]
Phone 608-218-7600
URL http://www.nimblegen.com/
Street address 504 S. Rosa Road
City Madison
State/province WI
ZIP/Postal code 53719
Country USA
 
Samples (1) GSM227608
Series (1)
GSE9002 8-chip high-resolution aCGH experiment NA15510 vs. NA18505

Data table header descriptions
ID PROBE_ID = The NimbleGen probe identifier. Used to identify a probe sequence within a design.
SEQ_ID The NimbleGen sequence identifier.
GENOME_COUNT The uniqueness count of the probe in the target genome.
LENGTH Length of the probe in base pairs.
GC The percent GC of the probe sequence.
SEQUENCE The DNA sequence synthesized on the array. Always shown 5’ to 3’.
GB_RANGE RefSeq accession with probe start and end coordinates

Data table
ID SEQ_ID GENOME_COUNT LENGTH GC SEQUENCE GB_RANGE
CHR01P000058140 chr1 1 58 0.38 TTTCCTGCTCACACAACCACAACCTGCAGCTATTACCTATTGTTAGGCTTAAAATAAT NC_000001.9[58140..58197]
CHR01P000530609 chr1 1 50 0.48 ACAACGCAAATGCACAAACAGCTCTATCCAACAACCCTGGAAGCAACCCA NC_000001.9[530609..530658]
CHR01P000704934 chr1 1 50 0.44 TATATAAGCGATCGAGCACTGGAGGTTGATGTTACAATGCGCTGAGATTG NC_000001.9[704934..704983]
CHR01P000708498 chr1 1 50 0.48 GAAGTGGTAGTGATCATCCCAGTGCACAGGATAGGTGGACAGTCTATGTA NC_000001.9[708498..708547]
CHR01P000736463 chr1 1 58 0.24 ACATTATAACAGCAATTTATGGAAATGTGTTGATTTATGGAAATGTGTTTGTATTTTA NC_000001.9[736463..736520]
CHR01P000739903 chr1 1 50 0.5 TTAACACACCCTTATTACATGAAGGAGCAGCAGAGCAGAGGGCGGCAAGA NC_000001.9[739903..739952]
CHR01P000743497 chr1 1 50 0.44 ACTGAGGAGTGAATAATGGGAAAGATCTGATTCGGCTGTATCAGGAAGGA NC_000001.9[743497..743546]
CHR01P000746232 chr1 1 50 0.54 CACTACCTGGCTGGCCAGTAGATCCACGCTATCTACACTACCTTCCTGTC NC_000001.9[746232..746281]
CHR01P000746942 chr1 1 50 0.5 TGGCCAGTAGATCCATGCTATCTCCACTACCTGCCTATCCAACTGATCCA NC_000001.9[746942..746991]
CHR01P000747612 chr1 1 50 0.54 GATCCACGCTGTCTATACTACCTCCCTGTCCAGTAGACCCACCCTGTCTA NC_000001.9[747612..747661]
CHR01P000748392 chr1 1 50 0.52 GTCTATACTACCTGCCTATCCTGCAGGTCCACCTTGTCTACACTACCTGC NC_000001.9[748392..748441]
CHR01P000751187 chr1 1 50 0.48 AGAGAGTAACCAGCACCAGCTTCACAGGAATGGCATGACCTTGATACGAT NC_000001.9[751187..751236]
CHR01P000751811 chr1 1 50 0.48 CAGAAAACCACTAAGGAATTTGGGAATTAGGCTTCTGCTGCCCTCTCTGC NC_000001.9[751811..751860]
CHR01P000754640 chr1 1 50 0.48 TAAACTAAGAATGCTGAGTGGTGTGCTGTGTGGGTGTACTGTGCTGGTGT NC_000001.9[754640..754689]
CHR01P000756792 chr1 1 58 0.4 TTTGTCAAGGAAAGTGCCGTCCAAATGCTAAATACTGATTATTTCTGCAGCAGTGACT NC_000001.9[756792..756849]
CHR01P000757432 chr1 1 50 0.44 TAAAGTGGTTCCAAAACGACAAGCATCCTGTAAAGTCGGAAGAGCTGTGT NC_000001.9[757432..757481]
CHR01P000759554 chr1 1 50 0.56 CATAGACCCACTAATGGCCCACCAGGACCAACCAGGAAGCAAGTGTGGAG NC_000001.9[759554..759603]
CHR01P000760244 chr1 1 50 0.46 ATTGATCCACGTGCACATCCATCCTTTCATCTCTACTTTCCTCCATCCCT NC_000001.9[760244..760293]
CHR01P000763011 chr1 1 50 0.58 AGATGCTGTGGTCTGTCTTCCCGGCTCCTGGTCTAGGGCTGTGGTTTCAC NC_000001.9[763011..763060]
CHR01P000763711 chr1 1 50 0.46 GTTAACAGCTGTGTGTGACACCAAAGAGAGACAGACCAGCAGAAGCTTAA NC_000001.9[763711..763760]

Total number of rows: 385573

Table truncated, full table size 45095 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL5814_2006-07-27_HG18_WG_CGH_1of8.ndf.gz 20.4 Mb (ftp)(http) NDF
GPL5814_2006-07-27_HG18_WG_CGH_1of8.pos.gz 3.0 Mb (ftp)(http) POS

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