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| Status |
Public on Aug 21, 2007 |
| Title |
GUTHRIE_YEAST_SPLICINGARRAY_v20060215a |
| Technology type |
spotted oligonucleotide |
| Distribution |
non-commercial |
| Organism |
Saccharomyces cerevisiae |
| Manufacturer |
Guthrie Lab, University of California, San Francisco |
| Manufacture protocol |
Arrays were pin-printed using standard techniques. All protocols are available at http://cat.ucsf.edu/equipment/arrayer/
|
| Support |
glass |
| Coating |
polysine |
| |
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| Web link |
http://derisilab.ucsf.edu/microarray/protocols.html
|
| Contributor(s) |
Pleiss JA, Whitworth GB, Bergkessel M, Guthrie C |
| Submission date |
Aug 19, 2007 |
| Last update date |
Jan 28, 2008 |
| Contact name |
Gregg Brooks Whitworth |
| E-mail(s) |
[email protected]
|
| Phone |
(415) 336-3872
|
| Organization name |
Washington and Lee Unversity
|
| Department |
Biology
|
| Street address |
204 West Washington St
|
| City |
Lexington |
| State/province |
VA |
| ZIP/Postal code |
24450 |
| Country |
USA |
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| Samples (36)
|
GSM219030, GSM219031, GSM219032, GSM219033, GSM219034, GSM219035
GSM219036, GSM219037, GSM219038, GSM219039, GSM219040, GSM219041, GSM219042, GSM219043, GSM219044, GSM219045, GSM219046, GSM219047, GSM219048, GSM219049, GSM219050, GSM219051, GSM219052, GSM219053, GSM219054, GSM219055, GSM219056, GSM219057, GSM219058, GSM219059, GSM219060, GSM219061, GSM219062, GSM219063, GSM219064, GSM219065
|
| Series (1) |
| GSE8817 |
Rapid, transcript-specific changes in splicing in response to environmental stress |
|
| Data table header descriptions |
| ID |
|
| Block |
Each of the 16 blocks corresponds to one of 16 printing pins |
| Row |
Row within the printing block |
| Column |
Column within the printing row |
| SPOT_ID |
Associated ORF and RNA species probed by this oligo |
| SEQUENCE |
Oligo nucleotide sequence printed at this position |
| ORF |
GenBank Identifier |
| Data table |
| ID |
Block |
Row |
Column |
SPOT_ID |
SEQUENCE |
ORF |
| 1.1.1 |
1 |
1 |
1 |
YGL226C-A - intron |
TTTTAACAACACACAGGACAATGAATAGTTCC |
YGL226C-A |
| 1.1.2 |
1 |
1 |
2 |
YGR148C - intron |
ATACTGTTCTCGTTGTCGGCTTGATAAATTTT |
YGR148C |
| 1.1.3 |
1 |
1 |
3 |
YHR016C - intron |
AAGATAGCTCTCTAGTCTGTGTCCATTGCTTA |
YHR016C |
| 1.1.4 |
1 |
1 |
4 |
YHR141C - exon |
CTAGAGCCCAATTAACCTTGAAGAGATGTAAG |
YHR141C |
| 1.1.5 |
1 |
1 |
5 |
YIL133C - exon |
AAGGGTCATTTAGTAGGTCGTTTAGCTTCCGT |
YIL133C |
| 1.1.6 |
1 |
1 |
6 |
YJL191W - exon |
ACGCCTCCTTTAACGATACCTTTGTACATGTT |
YJL191W |
| 1.1.7 |
1 |
1 |
7 |
YGL232W - intron |
CACGAATTAGAGTTCTTTAAGTACTAACGATC |
YGL232W |
| 1.1.8 |
1 |
1 |
8 |
YGR183C - intron |
ATTAGTTTCCCACCGATGAGCGCAACGACTTA |
YGR183C |
| 1.1.9 |
1 |
1 |
9 |
YHR021C - intron |
TAAGCATATGGTGTTGAGTTATGGGTAATCTA |
YHR021C |
| 1.1.10 |
1 |
1 |
10 |
YHR203C - exon |
TTGACGGTAAGGTTAGAACTGACACCACCTAC |
YHR203C |
| 1.1.11 |
1 |
1 |
11 |
YIL148W - exon |
ATCTGTTTGCCGTAAGTGTTATGCTAGATTGC |
YIL148W |
| 1.1.12 |
1 |
1 |
12 |
YJL205C-A - exon |
ATTTACACGAGCTCATAAAGAAGCGATGGGAC |
YJL205C-A |
| 1.1.13 |
1 |
1 |
13 |
YGL251C - intron |
TTATCAGTTTACACCATATCGGACAACAACAG |
YGL251C |
| 1.1.14 |
1 |
1 |
14 |
YGR214W - intron |
TCACAGCATATACCAAGTGTACGTTTTTGAAT |
YGR214W |
| 1.1.15 |
1 |
1 |
15 |
YHR039C-A - intron |
TGGACTGGTACCTCGTGACAAAGGTATTGGTT |
YHR039C-A |
| 1.1.16 |
1 |
1 |
16 |
YIL004C - exon |
AGAAGATCTGGGATCAGTATAAAAACATGGTT |
YIL004C |
| 1.1.17 |
1 |
1 |
17 |
YJL001W - exon |
TGTCAAAGGAAGAAACCGTAGATTTCATAAAG |
YJL001W |
| 1.1.18 |
1 |
1 |
18 |
YJR021C - exon |
CAGCTACAGGCAGGTATTAGTCGAAGAAATAA |
YJR021C |
| 1.1.19 |
1 |
1 |
19 |
YGR001C - intron |
GTAGAATTACTAACTAACACGAAACTTAATAG |
YGR001C |
| 1.1.20 |
1 |
1 |
20 |
YGR225W - intron |
GTTATTAAGAGCTTATGCTTTCACATACCCTT |
YGR225W |
Total number of rows: 6144
Table truncated, full table size 433 Kbytes.
| Supplementary file |
Size |
Download |
File type/resource |
| GPL5756.gal.gz |
40.6 Kb |
(ftp)(http) |
GAL |
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