|
Status |
Public on May 10, 2004 |
Title |
STv4_MMCC |
Technology type |
spotted DNA/cDNA |
Distribution |
non-commercial |
Organism |
Salmonella enterica |
|
|
Description |
Custom made Salmonella array
|
|
|
Contributor(s) |
Porwollik S, McClelland M, Frye JG, Eckhardt C, Jackson S, Blackmer F |
Submission date |
Oct 14, 2003 |
Last update date |
May 26, 2005 |
Contact name |
Michael McClelland |
E-mail(s) |
[email protected]
|
Phone |
858-336-9554
|
Organization name |
University of California, Irvine
|
Department |
Microbiology & Molecular Genetics
|
Street address |
132 Med Surge I
|
City |
Irvine |
State/province |
CA |
ZIP/Postal code |
92697 |
Country |
USA |
|
|
Samples (168)
|
GSM12302, GSM12303, GSM12304, GSM12305, GSM12306, GSM12307
GSM12381, GSM12382, GSM12383, GSM12384, GSM12385, GSM12386, GSM12387, GSM12388, GSM12389, GSM12390, GSM12391, GSM12392, GSM12393, GSM12394, GSM12395, GSM16868, GSM16869, GSM16870, GSM16871, GSM16872, GSM16873, GSM16874, GSM16875, GSM16876, GSM16877, GSM16878, GSM16879, GSM16880, GSM16881, GSM16882, GSM16883, GSM16884, GSM16885, GSM16886, GSM16887, GSM16888, GSM18513, GSM18514, GSM18515, GSM18516, GSM18517, GSM18518, GSM24258, GSM24259, GSM24260, GSM24261, GSM24262, GSM24263, GSM24264, GSM24265, GSM24266, GSM24267, GSM24268, GSM24269, GSM24270, GSM24271, GSM24272, GSM24273, GSM24274, GSM24275, GSM24276, GSM24277, GSM24278, GSM24279, GSM24280, GSM24281, GSM24282, GSM24283, GSM24284, GSM24395, GSM24396, GSM24397, GSM24398, GSM24399, GSM24400, GSM24401, GSM24402, GSM24403, GSM24404, GSM24405, GSM24406, GSM24407, GSM24408, GSM24409, GSM24410, GSM24411, GSM24412, GSM24413, GSM24414, GSM24415, GSM24416, GSM24417, GSM24418, GSM24419, GSM24420, GSM24421, GSM24422, GSM24423, GSM24424, GSM41168, GSM41169, GSM41170, GSM41171, GSM41172, GSM41173, GSM43870, GSM43871, GSM43872, GSM43873, GSM43874, GSM43875, GSM43876, GSM43877, GSM43878, GSM43879, GSM43880, GSM43881, GSM68748, GSM68749, GSM68750, GSM68751, GSM68752, GSM68753, GSM68754, GSM68755, GSM68756, GSM68757, GSM68758, GSM68759, GSM68760, GSM68761, GSM68762, GSM68763, GSM68764, GSM68765, GSM68766, GSM68767, GSM68768, GSM68769, GSM68770, GSM68771, GSM68772, GSM68773, GSM68774, GSM68778, GSM68779, GSM68780, GSM68784, GSM68785, GSM68786, GSM68787, GSM68788, GSM68789, GSM68790, GSM68791, GSM68792, GSM68793, GSM68794, GSM68795, GSM68796, GSM68797, GSM68798
|
Series (10)
|
GSE809 |
14028s:rpoH_heat_shock_37C_RNA |
GSE1035 |
Genomic comparisons of Salmonella enterica sspI strains |
GSE1625 |
14028 time course on swarming plates |
GSE1632 |
14028 versus che mutants |
GSE2242 |
Genomic comparisons of Salmonella enterica serovar Enteritidis isolates |
GSE2340 |
14028 cheY mutant time course expression on plate |
GSE2341 |
Transcription profiles of che and flgM mutants of Typhimurium 14028 at 3h on agar plates |
GSE3094 |
Analysis of genomic differences between Salmonella typhi ISP1820 and CT18 |
GSE3095 |
Analysis of SCOTS effect on transcript population |
GSE3096 |
Expression profiles of Salmonella typhi inside human macrophages (THP-1) compared to supernatant |
|
Data table header descriptions |
ID |
|
ARRAY_ROW |
subarray row |
ARRAY_COLUMN |
subarray column |
ROW |
spot row |
COLUMN |
spot column |
NEW_CHIP_ID |
CHIP# as of 020901 |
OLD_CHIP_ID |
previous CHIP# |
SEQUENCE |
amplified sequence |
PRIMARY_LT2_GENE |
first first STM LT2 gene represented (>97%ID over 100bp & >90% over entire fragment) |
SECONDARY_LT2_GENES |
further LT2 genes represented (>97%ID over 100bp & >90% over entire fragment) |
SINGLE_CRITERIUM_LT2_GENES |
more LT2 genes represented (>97%ID over 100bp & >90% over entire fragment) |
BEST_LT2_GENE |
best represented STM# |
LT2_GENE_NAME |
best represented gene name in STM LT2 |
PRIMARY_CT18_GENE |
first STY CT18 gene represented (>97%ID over 100bp & >90% over entire fragment) |
SECONDARY_CT18_GENES |
further CT18 genes represented (>97%ID over 100bp & >90% over entire fragment) |
SINGLE_CRITERIUM_CT18_GENES |
more CT18 genes represented (>97%ID over 100bp OR >90% over entire fragment) |
BEST_CT18_GENE |
best represented STY# |
CT18_GENE_NAME |
best represented gene name in STY CT18 |
SPT SIMILARITY |
sequence similarity in SPT PT4 over 100bp window |