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Platform GPL545 Query DataSets for GPL545
Status Public on Dec 19, 2003
Title Rosetta (Merck) Splicing Experiment, Chip 3 of 5
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
 
Description Oligonucleotide array on glass.
Contains 36-mer probes on 10-mer T stilts (46-mer), each spanning an exon-exon junction.
Submitted for Science publication Johnson et al.
Keywords = junction splicing oligonucleotide
 
Web link http://www.rii.com
Contributor(s) Johnson JM, Castle J, Garrett-Engele P, Loerch PM, Kan Z, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD
Submission date Oct 14, 2003
Last update date Jun 16, 2005
Contact name John Castle
E-mail(s) [email protected]
Phone 425-636-6337
Organization name Merck
Department Informatics
Lab Rosetta
Street address 12040 115th Ave NE
City Kirkland
State/province WA
ZIP/Postal code 98034
Country USA
 
Samples (54) GSM11268, GSM11269, GSM11270, GSM11271, GSM11272, GSM11273 
Series (1)
GSE740 Rosetta_Merck_Splicing_Experiment

Data table header descriptions
ID Rosetta generated unique probe identifier
GENE_SYMBOL Gene name from Locus Link as of November, 2001.
GB_ACC RefSeq Accession Number of sequence used to design oligonucleotide probe, based on NCBI file hs.fna as of November 2001.
EXON1 5prime exon of the junction probe, as defined by RefSeq mRNA, NCBI conting, and sim4 as of November, 2001
EXON2 3prime exon of the junction probe, as defined by RefSeq mRNA, NCBI conting, and sim4 as of November, 2001
SPOT_ID
GENOMIC_CONTIG Accession number of NCBI genomic contig used. As of November, 2001 and specified by LocusLink
SEQUENCE Sequence of oligonucleotide probe

Data table
ID GENE_SYMBOL GB_ACC EXON1 EXON2 SPOT_ID GENOMIC_CONTIG SEQUENCE
174973551 FLJ20320 NM_017765.1 3 4 spans exon 3 and exon 4 NT_029218.2 TGCTGCATCTACCTTCCCCCAGTTCATCAAAGCCTATTTTTTTTTT
174973552 FLJ20320 NM_017765.1 4 5 spans exon 4 and exon 5 NT_029218.2 GACCAGCTGCCCCTGCAGACCTACACGGCTGTGTATTTTTTTTTTT
174973553 FLJ20320 NM_017765.1 5 6 spans exon 5 and exon 6 NT_029218.2 GGACACGCCCCTCTCTGTTGTCTGCCCCCATCAACTTTTTTTTTTT
174973554 FLJ20320 NM_017765.1 6 7 spans exon 6 and exon 7 NT_029218.2 GTGGAGTCGGGCAGCAAGCCCTTCACCCGGCAGGAATTTTTTTTTT
174973555 FLJ20320 NM_017765.1 7 8 spans exon 7 and exon 8 NT_029218.2 CCTCAGATCCGCACCAACTTCCTCCGGAAGTCCACCTTTTTTTTTT
174973556 FLJ20320 NM_017765.1 8 9 spans exon 8 and exon 9 NT_029218.2 CTGCTGCTCGACACCATCATCTCCATCCAGTTCCTGTTTTTTTTTT
174973557 FLJ20321 NM_017766.1 1 2 spans exon 1 and exon 2 NT_021937.6 GCACCAGGCAGGCTTCAGGAGAGGCCTCCTCGCTGCTTTTTTTTTT
174973558 FLJ20321 NM_017766.1 2 3 spans exon 2 and exon 3 NT_021937.6 GACCGTCTCCACTGTCAAGAACGGACTGCCCACAGATTTTTTTTTT
174973559 FLJ20321 NM_017766.1 3 4 spans exon 3 and exon 4 NT_021937.6 CCAGAAATATATTGCCAGGTTCTCGGGCAGCCAGCATTTTTTTTTT
174973560 FLJ20321 NM_017766.1 4 5 spans exon 4 and exon 5 NT_021937.6 CCTGAGTGTAACTACCAGAGGTTCACGAGTAAGCAGTTTTTTTTTT
174973561 FLJ20321 NM_017766.1 5 6 spans exon 5 and exon 6 NT_021937.6 CACTATCACTGCATGCAGGTGGGCTGTAACAAGGTGTTTTTTTTTT
174973562 FLJ20321 NM_017766.1 6 7 spans exon 6 and exon 7 NT_021937.6 CACGCACTTCCACTGCAGGCGCCCCGGCTGCACATTTTTTTTTTTT
174973563 FLJ20321 NM_017766.1 7 8 spans exon 7 and exon 8 NT_021937.6 CTGCCACCTTTGACCCAGGAAGCGGGCAGCAGGTCATTTTTTTTTT
174973564 FLJ20321 NM_017766.1 8 9 spans exon 8 and exon 9 NT_021937.6 GACTGTGAAGGAGCCCAGCAACGAATCAAATGGCCATTTTTTTTTT
174973565 FLJ20321 NM_017766.1 9 10 spans exon 9 and exon 10 NT_021937.6 TCCTCGCTTATGAATAAGATGTCTCAGGGCAACCCTTTTTTTTTTT
174973566 FLJ20321 NM_017766.1 10 11 spans exon 10 and exon 11 NT_021937.6 GAAGGTGTACCTGCGCAGGTTTGGTACAAAGGACTTTTTTTTTTTT
174973567 FLJ20321 NM_017766.1 11 12 spans exon 11 and exon 12 NT_021937.6 GGCCATCAAGCACGCAAACTTCCACTTCCGGACAGATTTTTTTTTT
174973568 FLJ20323 NM_019005.1 1 2 spans exon 1 and exon 2 NT_007844.6 CTCTCGTAATTTGCCACGTGCTGTTGCAAATATTCTTTTTTTTTTT
174973569 FLJ20323 NM_019005.1 2 3 spans exon 2 and exon 3 NT_007844.6 ACTTGTTAAACTTGAAAGTGAATGGACCTGAGTGGATTTTTTTTTT
174973570 FLJ20323 NM_019005.1 3 4 spans exon 3 and exon 4 NT_007844.6 TCTGGTATACTCTGCACTTTATGAAGCAATACACAGTTTTTTTTTT

Total number of rows: 23107

Table truncated, full table size 2648 Kbytes.






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