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Platform GPL543 Query DataSets for GPL543
Status Public on Dec 19, 2003
Title Rosetta (Merck) Splicing Experiment, Chip 1 of 5
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
 
Description Oligonucleotide array on glass.
Contains 36-mer probes on 10-mer T stilts (46-mer), each spanning an exon-exon junction.
Submitted for Science publication Johnson et al.
Keywords = junction splicing oligonucleotide
 
Web link http://www.rii.com
Contributor(s) Johnson JM, Castle J, Garrett-Engele P, Loerch PM, Kan Z, Armour CD, Santos R, Schadt EE, Stoughton R, Shoemaker DD
Submission date Oct 14, 2003
Last update date Jan 18, 2013
Contact name John Castle
E-mail(s) [email protected]
Phone 425-636-6337
Organization name Merck
Department Informatics
Lab Rosetta
Street address 12040 115th Ave NE
City Kirkland
State/province WA
ZIP/Postal code 98034
Country USA
 
Samples (54) GSM11216, GSM11217, GSM11218, GSM11219, GSM11220, GSM11221 
Series (1)
GSE740 Rosetta_Merck_Splicing_Experiment

Data table header descriptions
ID Rosetta generated unique probe identifier
GENE_SYMBOL Gene name from Locus Link as of November, 2001.
GB_ACC RefSeq Accession Number of sequence used to design oligonucleotide probe, based on NCBI file hs.fna as of November 2001.
EXON1 5prime exon of the junction probe, as defined by RefSeq mRNA, NCBI conting, and sim4 as of November, 2001
EXON2 3prime exon of the junction probe, as defined by RefSeq mRNA, NCBI conting, and sim4 as of November, 2001
SPOT_ID
GENOMIC_CONTIG Accession number of NCBI genomic contig used. As of November, 2001 and specified by LocusLink
SEQUENCE Sequence of oligonucleotide probe

Data table
ID GENE_SYMBOL GB_ACC EXON1 EXON2 SPOT_ID GENOMIC_CONTIG SEQUENCE
174927337 ABCA7 NM_019112.2 1 2 spans exon 1 and exon 2 NT_011277.6 TATCGCCGGAGACAGCCGGTCCAGCTCCTGGTCGAATTTTTTTTTT
174927338 ABCA7 NM_019112.2 2 3 spans exon 2 and exon 3 NT_011277.6 CCCTGGAGCACCATGAATGCCACTTCCCAAACAAGCTTTTTTTTTT
174927339 ABCA7 NM_019112.2 3 4 spans exon 3 and exon 4 NT_011277.6 CAACTTCAACGACTCCCTGGTCTCCCGGCTGCTAGCTTTTTTTTTT
174927340 ABCA7 NM_019112.2 4 5 spans exon 4 and exon 5 NT_011277.6 GGGCTGCACGCAGCACGGCCCAGCCTCAACCAACCATTTTTTTTTT
174927341 ABCA7 NM_019112.2 5 6 spans exon 5 and exon 6 NT_011277.6 ACGTCACTGCTGCGCACGGAATCCCTGGGGTTGGCATTTTTTTTTT
174927342 ABCA7 NM_019112.2 6 7 spans exon 6 and exon 7 NT_011277.6 GAGGACCTGGCCCAGGAGCTCCTGGCGCTGCGCAGCTTTTTTTTTT
174927343 ABCA7 NM_019112.2 7 8 spans exon 7 and exon 8 NT_011277.6 TGCCAGACAGCAGCCTGAGCCCCGCCTGCTCGGAGCTTTTTTTTTT
174927344 ABCA7 NM_019112.2 8 9 spans exon 8 and exon 9 NT_011277.6 CGGAAGCTCATGGCCCAGGTCAACCGGACCTTCGAGTTTTTTTTTT
174927345 ABCA7 NM_019112.2 9 10 spans exon 9 and exon 10 NT_011277.6 AATGTGGCCATGCTGCAGCGGCTCCTGCAGATGCAGTTTTTTTTTT
174927346 ABCA7 NM_019112.2 10 11 spans exon 10 and exon 11 NT_011277.6 CTGGGCCGAGTGACGGAGTGCCTGTCCTTGGACAAGTTTTTTTTTT
174927347 ABCA7 NM_019112.2 11 12 spans exon 11 and exon 12 NT_011277.6 CAATAAGATCAGGGACAGGTTTTGGGACCCTGGCCCTTTTTTTTTT
174927348 ABCA7 NM_019112.2 12 13 spans exon 12 and exon 13 NT_011277.6 GTGCTATGTGGACGACGTGTTCCTGCGTGTGCTGAGTTTTTTTTTT
174927349 ABCA7 NM_019112.2 13 14 spans exon 13 and exon 14 NT_011277.6 CTGGTTCTGGTGCTCAAGCTGGGAGACATCCTCCCCTTTTTTTTTT
174927350 ABCA7 NM_019112.2 14 15 spans exon 14 and exon 15 NT_011277.6 GGTGGCCGCGTGGCCGCGAGCCTGCTGTCGCCCGTGTTTTTTTTTT
174927351 ABCA7 NM_019112.2 15 16 spans exon 15 and exon 16 NT_011277.6 TGGAAGCTGTGTGCCCAGGCCAGTACGGGATCCCTGTTTTTTTTTT
174927352 ABCA7 NM_019112.2 16 17 spans exon 16 and exon 17 NT_011277.6 CCCCGCTGGACCCAAAGGTGCTGGTAGAAGAGGCACTTTTTTTTTT
174927353 ABCA7 NM_019112.2 17 18 spans exon 17 and exon 18 NT_011277.6 CGGCAAGACCACCACCCTGTCCATCTTGAGTGGCCTTTTTTTTTTT
174927354 ABCA7 NM_019112.2 18 19 spans exon 18 and exon 19 NT_011277.6 CAACGTGCTGTTTGACATGCTGACCGTGGACGAGCATTTTTTTTTT
174927355 ABCA7 NM_019112.2 19 20 spans exon 19 and exon 20 NT_011277.6 AGACTCGCCACCTCTCTGGTGGGATGCAACGGAAGCTTTTTTTTTT
174927356 ABCA7 NM_019112.2 20 21 spans exon 20 and exon 21 NT_011277.6 TGCTCAAATACCGAGAAGGTCGCACGCTGATCCTCTTTTTTTTTTT

Total number of rows: 23107

Table truncated, full table size 2628 Kbytes.






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