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Platform GPL4494 Query DataSets for GPL4494
Status Public on Dec 01, 2006
Title Human whole genome tiling array, chip 06 of 14
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Affymetrix
Manufacture protocol See manufacturer's web site
 
 
Contributor(s) Yang A, Zhu Z, Kapranov P, McKeon F, Church G, Gingeras T, Struhl K
Submission date Oct 25, 2006
Last update date Dec 01, 2006
Contact name Kevin Struhl
Organization name Harvard Medical School
Department Dept. Of Biological Chemistry & Molecular Pharmacology
Lab Struhl lab
Street address 240 Longwood Ave.
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Samples (6) GSM142532, GSM142533, GSM142534, GSM142921, GSM142922, GSM142923
Series (1)
GSE6132 Whole genome mapping of p63 binding sites in ME180 human cervical carcinoma cells

Data table header descriptions
ID
SEQUENCE
Strand
Chromosome
Coordinate Genomic coordinate, NCBI Build 35
X_PM_probe
Y_PM_probe
X_MM_probe
Y_MM_probe

Data table
ID SEQUENCE Strand Chromosome Coordinate X_PM_probe Y_PM_probe X_MM_probe Y_MM_probe
6_15500006_420_549 CCAAATGAGACAAAGAGATCTAGTG t chr6 15500006 420 549 420 550
6_15500052_1185_1799 GGAGCATGCCTTCAACACCCCAAAG t chr6 15500052 1185 1799 1185 1800
6_15500088_179_1357 CCAAAAGCATGATAGAGCCACCAAA t chr6 15500088 179 1357 179 1358
6_15500125_987_271 TCCACATTCTGCAAAAGCATCCAAA t chr6 15500125 987 271 987 272
6_15500166_1796_953 GAAGGGCACATTTCCTCCAGAATAC t chr6 15500166 1796 953 1796 954
6_15500202_82_741 TGCCTTCACACACCAAAGGACAGGG t chr6 15500202 82 741 82 742
6_15500224_97_127 CACTCTGGGATCACTGCACTGGTGC t chr6 15500224 97 127 97 128
6_15500310_2017_2237 TAAAACCTAGGCCAAGTTGGACTCA t chr6 15500310 2017 2237 2017 2238
6_15500346_928_223 AGCAATCATCAACTAATACTCTGGA t chr6 15500346 928 223 928 224
6_15500382_1700_1599 GGCCACCTTAACGTGGCTTGACAGT t chr6 15500382 1700 1599 1700 1600
6_15500428_1210_2327 TACAAACGAATATCCCAAAGGGTGA t chr6 15500428 1210 2327 1210 2328
6_15500475_1031_2477 GCCCCAGGCTTATTCAGAAAACTAA t chr6 15500475 1031 2477 1031 2478
6_15500503_993_2491 GGGAAATAGAGATTGGAACTGTTAA t chr6 15500503 993 2491 993 2492
6_15500540_91_761 GGTGGTAATCAGTCTAGCTTGTAGG t chr6 15500540 91 761 91 762
6_15500576_416_823 GACAAATCACCTTAAATTTAGCAGC t chr6 15500576 416 823 416 824
6_15500621_15_1889 GACAGAAGGTGAATCCTTTTCAGGG t chr6 15500621 15 1889 15 1890
6_15500644_2326_2281 TCCCCCATAAACAGGGCAAGTCGGA t chr6 15500644 2326 2281 2326 2282
6_15500684_2348_2059 TCGTCCCCTGTTACAAGCTTAGAAC t chr6 15500684 2348 2059 2348 2060
6_15500720_942_161 TGACCAACATGTCTGCAGCAGTCCC t chr6 15500720 942 161 942 162
6_15500744_701_413 AATGACCTATACTGCTGACCATGCT t chr6 15500744 701 413 701 414

Total number of rows: 2962602

Table truncated, full table size 234283 Kbytes.




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Supplementary data files not provided
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