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Status
Public on Aug 17, 2006
Title
Agilent-014716 Mouse Promoter ChIP-on-Chip Set 244K, Microarray 1 of 2 (G4490A) (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Mus musculus Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Catalog number
G4490A
Description
Submission date
Aug 17, 2006
Last update date
Dec 06, 2012
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (92)
GSM189179 , GSM189181 , GSM189332 , GSM189334 , GSM189336 , GSM189338
GSM189340 ,
GSM189422 ,
GSM189480 ,
GSM189482 ,
GSM207561 ,
GSM207795 ,
GSM241972 ,
GSM241973 ,
GSM266076 ,
GSM266077 ,
GSM319610 ,
GSM319628 ,
GSM319630 ,
GSM319962 ,
GSM320261 ,
GSM320263 ,
GSM333366 ,
GSM333459 ,
GSM333462 ,
GSM333635 ,
GSM333672 ,
GSM333791 ,
GSM339384 ,
GSM339386 ,
GSM339388 ,
GSM339391 ,
GSM412770 ,
GSM412771 ,
GSM417692 ,
GSM417714 ,
GSM456218 ,
GSM456219 ,
GSM456220 ,
GSM456221 ,
GSM456222 ,
GSM456223 ,
GSM456224 ,
GSM456225 ,
GSM462999 ,
GSM463001 ,
GSM501682 ,
GSM501683 ,
GSM552522 ,
GSM558404 ,
GSM558406 ,
GSM558408 ,
GSM558410 ,
GSM558412 ,
GSM558414 ,
GSM558416 ,
GSM558418 ,
GSM558420 ,
GSM558422 ,
GSM558424 ,
GSM558426 ,
GSM558428 ,
GSM558430 ,
GSM558432 ,
GSM558434 ,
GSM558436 ,
GSM558438 ,
GSM558440 ,
GSM558442 ,
GSM558444 ,
GSM558446 ,
GSM558448 ,
GSM558450 ,
GSM568647 ,
GSM568648 ,
GSM568649 ,
GSM568650 ,
GSM568651 ,
GSM593667 ,
GSM606628 ,
GSM655941 ,
GSM722527 ,
GSM722529 ,
GSM722531 ,
GSM742100 ,
GSM742101 ,
GSM742102 ,
GSM742103 ,
GSM742104 ,
GSM742105 ,
GSM1716749 ,
GSM1716750 Series (26)
GSE7815 Histone H3K4 and H3K27 trimethylation analysis in ES cells, Mefs and induced pluriptent cells.
GSE8395 Tcf3 Targets in Mouse Embryonic Stem Cells E14
GSE9572 Microarray-based global mapping of integration sites of retrotransposon, intracisternal A-particle, in mouse genome
GSE10536 ChIP-chip of mouse ES cells using Ring1B antibody
GSE10573 Superseries_Endoh2008_PcG_Pou5f1
GSE12482 Sall4 regulates distinct transcription circuitries in different blastocyst-derived stem cell lineages
GSE13247 A role for mammalian Sin3 in permanent gene silencing
GSE13467 Comparison Ezh1 and Ezh2 binding by ChIP on chip in F9 mouse cells
GSE16427 p53 binding in mouse embryonic stem cells untreated or treated with adriamycin
GSE16646 Targets of the transcription factor Brachyury in differentiating mouse ES cells
GSE18258 Global analysis of H3K4 methylation
GSE18262 ChIP-chip with antibodies for histone 3 lysine 4 trimethylation and histone 3 in Mll1+/+ and Mll1-/- MEFs
GSE18629 SMAD1/5, SMAD2 and SMAD4 binding/occupancy profiling in murine embryonic stem cells R1
GSE20068 p27 binds to promoters of multiple genes leading to their repression
GSE20069 p27Kip1 regulates transcription of genes involved in tumorigenesis
GSE22195 Zic3 ChIP-on-chip in mouse ES cells
GSE22474 Genome-wide location analysis of Dnmt3a-mediated epigenetic regulation in murine postnatal subventricular zone (SVZ) neural stem cells (NSCs) [Agilent]
GSE22476 Dnmt3a-dependent non-promoter DNA methylation facilitates transcription of neurogenic genes
GSE23043 Chip-on-chip analysis of direct Nkx2.1 target genes in proliferating and differentiating epithelium in mouse lung development.
GSE24623 Adult_mouse_testis_CREM_ChIP_chip
GSE26653 HoxB4 in hematopoietic stem cells
GSE29208 TEAD4 occupied genes in differentiated C2C12 myoblasts
GSE29985 Identification by ChIP-on-Chip of ARX target genes, a transcription factor implicated in mental retardation and epilepsy
GSE30191 ARX transcription factor implicated in mental retardation and epilepsy
GSE70074 RING1 links retinoic acid signaling to the early proximal-distal specification of forelimb bud via Meis2 repression (ChIP-chip)
GSE70077 RING1 proteins contribute to early proximal-distal specification of the forelimb bud by restricting Meis2 expression
Relations Alternative to
GPL14573 (Probe Name version)Alternative to
GPL7777 Alternative to
GPL7793
Data table header descriptions ID Agilent feature number
COL Column
ROW Row
SPOT_ID Spot identifier
CONTROL_TYPE Control type
GB_ACC GenBankAccession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
CYTOBAND Cytoband
DESCRIPTION Description
GB_RANGE NCBI Build 35.1 Accession.Version[start..end]
Data table ID COL ROW SPOT_ID CONTROL_TYPE GB_ACC GENE_SYMBOL GENE_NAME ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GB_RANGE 1
267
912
MmCGHBrightCorner
pos
2
267
910
DarkCorner
pos
3
267
908
DarkCorner
pos
4
267
906
A_68_P20796006
FALSE
NM_178593 Rcsd1
ref|NM_178593|ref|Rcsd1:-121|ref|NM_001038846:-121
chr1:165678899-165678956
PROMOTER
NC_000067.3[165678899..165678956]
5
267
904
A_68_P25256078
FALSE
NM_182809 Ntrk3
ref|NM_182809|ref|Ntrk3:1257|ref|NM_008746:1065
chr7:074437220-074437268
INSIDE
NC_000073.3[074437220..074437268]
6
267
902
A_68_P24053343
FALSE
NM_001003953 Fbxl10
ref|NM_001003953|ref|Fbxl10:-202|ref|NM_001005866:-761|ens|ENSMUST00000071046:-59
chr5:122223494-122223538
PROMOTER
NC_000071.3[122223494..122223538]
7
267
900
A_68_P25294618
FALSE
NM_212436 Olfr301
ref|NM_212436|ref|Olfr301:-4946|ens|ENSMUST00000073222:-4943
chr7:082342540-082342599
PROMOTER
NC_000073.3[082342540..082342599]
8
267
898
A_68_P24008177
FALSE
NM_175403 2410014A08Rik
ref|NM_175403|ref|2410014A08Rik:-1932|ref|NM_013879:26043|ens|ENSMUST00000086548:28882|mgc|BC058245:-1948
chr5:114380882-114380941
PROMOTER
NC_000071.3[114380882..114380941]
9
267
896
A_68_P24996148
FALSE
NM_194058 Nalp9b
ref|NM_194058|ref|Nalp9b:-69|ens|ENSMUST00000073151:-80|ens|ENSMUST00000093641:2249
chr7:017690298-017690357
PROMOTER
NC_000073.3[017690298..017690357]
10
267
894
A_68_P21679321
FALSE
NM_175467 C130053K05Rik
ref|NM_175467|ref|C130053K05Rik:-1868|mgc|BC094496:-2101
chr2:139232875-139232934
PROMOTER
NC_000068.4[139232875..139232934]
11
267
892
A_68_P22566668
FALSE
NM_177860 D830013H12
ref|NM_177860|ref|D830013H12:2340|ens|ENSMUST00000093963:-1062|ens|ENSMUST00000053318:2340
chr3:137873265-137873310
INSIDE
NC_000069.3[137873265..137873310]
12
267
890
A_68_P22381057
FALSE
NM_013609 Ngfb
ref|NM_013609|ref|Ngfb:-4795|ens|ENSMUST00000035952:-4795
chr3:102258999-102259049
PROMOTER
NC_000069.3[102258999..102259049]
13
267
888
A_68_P23868571
FALSE
NM_023135 Sult1e1
ref|NM_023135|ref|Sult1e1:-1529|mgc|BC034891:-1571
chr5:087529858-087529917
PROMOTER
NC_000071.3[087529858..087529917]
14
267
886
A_68_P21399496
FALSE
NM_146586 Olfr1018
ref|NM_146586|ref|Olfr1018:-4105|ens|ENSMUST00000054201:-4105
chr2:085662554-085662613
PROMOTER
NC_000068.4[085662554..085662613]
15
267
884
A_68_P24126426
FALSE
NM_015799 Trfr2
ref|NM_015799|ref|Trfr2:775|mgc|BC013654:775
chr5:136489824-136489870
INSIDE
NC_000071.3[136489824..136489870]
16
267
882
A_68_P24946859
FALSE
NM_029934 Leng4
ref|NM_029934|ref|Leng4:254|mgc|BC023417:-298
chr7:003316205-003316256
INSIDE
NC_000073.3[003316205..003316256]
17
267
880
A_68_P23570379
FALSE
NM_031168 Il6
ref|NM_031168|ref|Il6:-1922|ens|ENSMUST00000026845:-2082
chr5:029044121-029044180
PROMOTER
NC_000071.3[029044121..029044180]
18
267
878
A_68_P21139947
FALSE
NM_146944 Olfr348
ref|NM_146944|ref|Olfr348:-1689|ref|NM_146946:-8400|ens|ENSMUST00000056865:-1689
chr2:036792119-036792178
PROMOTER
NC_000068.4[036792119..036792178]
19
267
876
A_68_P22344362
FALSE
NM_021281 Ctss
ref|NM_021281|ref|Ctss:296|mgc|BC002125:263
chr3:095401062-095401115
INSIDE
NC_000069.3[095401062..095401115]
20
267
874
A_68_P25366401
FALSE
NM_027629 Pgm2l1
ref|NM_027629|ref|Pgm2l1:-788|mgc|BC076571:-874|ens|ENSMUST00000086847:2099956
chr7:096273048-096273107
PROMOTER
NC_000073.3[096273048..096273107]
243504 43736 Kbytes .Supplementary data files not provided
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