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Platform GPL3021 Query DataSets for GPL3021
Status Public on Dec 09, 2005
Title ISU Maize 12k cDNA Generation II Version B-IG
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Zea mays
Manufacturer Schnable Laboratory at Iowa State University(ISU)
Manufacture protocol The ISU microarray facility have generated a maize gene chip that contains 12,160 spotted cDNA inserts. These cDNA clones were obtained from NSF Plant Genome EST projects led by Ginny Walbot and Pat Schnable.
 
 
Contributor(s) Schnable PS
Submission date Oct 26, 2005
Last update date May 01, 2006
Contact name Patrick S. Schnable
E-mail(s) [email protected]
Phone 515-294-0975
Organization name Iowa State University
Street address 2035B Roy J Carver Co-Lab
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 
Samples (144) GSM66053, GSM67527, GSM67528, GSM75616, GSM75617, GSM75618 
Series (1)
GSE3017 Global gene expression profiling of developing maize anthers

Data table header descriptions
ID
meta_row The number of rows of subgrids
meta_column The number of columns of subgrids
row The number of rows of spots contained within the grid
column The number of columns of spots contained within the grid
ref Plate source refer information of spots
GB_ACC GeneBank Accession Number of spots
GB_LIST List of GenBank Accession Numbers if a spot is associated with more than one number
SPOT_ID Identify the feature of spots without GB_ACC
SPOT_INFO Specifies spot category - Maize Gene, Maize Control Gene, Exogenous, Human Control Gene, No Sequence (Sequence not obtained while resequencing the spot), Unspecified (Suspected cross contamination), Empty (The original source plate well was empty or added to chip to fill the matrix), BadPCR (Anything that didn't have one distinct band, e.g. no band, multiple bands, smears) and Unknown (No GB_ACC or Clone ID or No ID given)

Data table
ID meta_row meta_column row column ref GB_ACC GB_LIST SPOT_ID SPOT_INFO
1 1 1 1 1 stan2027h-i-13-NoSeq(AI782943) No Sequence No Sequence
2 1 1 1 2 stan2027h-a-13-DV491105 DV491105 Maize Gene
3 1 1 1 3 stan2027h-i-9-DV490256 DV490256 Maize Gene
4 1 1 1 4 stan2027h-a-9-DV489539 DV489539 Maize Gene
5 1 1 1 5 stan2027h-i-5-DV491396 DV491396 Maize Gene
6 1 1 1 6 stan2027h-a-5-DV490281 DV490281 Maize Gene
7 1 1 1 7 stan2027h-i-1-DV490929 DV490929 Maize Gene
8 1 1 1 8 stan2027h-a-1-NoSeq(AI782984) No Sequence No Sequence
9 1 1 1 9 stan2124h-i-21-NoSeq(AW000326) No Sequence No Sequence
10 1 1 1 10 stan2124h-a-21-NoSeq(AI783310) No Sequence No Sequence
11 1 1 1 11 stan2124h-i-17-unspecified(AW000273) Unspecified Unspecified
12 1 1 1 12 stan2124h-a-17-unspecified(AI783316) Unspecified Unspecified
13 1 1 1 13 stan2124h-i-13-DV490140 DV490140 Maize Gene
14 1 1 1 14 stan2124h-a-13-DV490898 DV490898 Maize Gene
15 1 1 1 15 stan2124h-i-9-DV489724 DV489724 Maize Gene
16 1 1 1 16 stan2124h-a-9-DV490800 DV490800 Maize Gene
17 1 1 1 17 stan2124h-i-5-DV490226 DV490226 Maize Gene
18 1 1 1 18 stan2124h-a-5-DV491504 DV491504 Maize Gene
19 1 1 1 19 stan2124h-i-1-DV491770 DV491770 Maize Gene
20 1 1 1 20 stan2124h-a-1-DV491730 DV491730 Maize Gene

Total number of rows: 12160

Table truncated, full table size 774 Kbytes.






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