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Platform GPL26167

Query DataSets for GPL26167

Status

Public on Feb 07, 2019

Title

PromethION (Homo sapiens)

Technology type

high-throughput sequencing

Distribution

virtual

Organism

Homo sapiens

Submission date

Feb 07, 2019

Last update date

Feb 07, 2019

Contact name

GEO

Country

USA

Samples (773)

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GSM3595457, GSM3595458, GSM3595459, GSM3595460, GSM4066219, GSM4073916

Series (91)

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GSE118158	Targeted, long-read RNA sequencing of non-coding genomic regions associated with neuropsychiatric functions.
GSE123191	Human co-transcriptional splicing kinetics and coordination revealed by direct nascent RNA sequencing
GSE137048	miRNA-independent function of long noncoding pri-miRNA loci

GSE149117	Pore-C: Combination of chromatin capture assay and Oxford Nanopore Technology long read sequencing.
GSE155708	Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes [NP]
GSE155729	Robust single-cell discovery of RNA targets of RNA binding proteins and ribosomes
GSE155791	Methylation and accessibility profiling of GM12878, MCF-10A, MCF-7, and MDA-MB-231 using nanopore sequencing
GSE158011	DNA methylation maintains integrity of higher order genome architecture
GSE159297	Transient naive reprogramming corrects hiPS cells functionally and epigenetically
GSE159326	POINT technology illuminates the processing of polymerase-associated intact nascent transcripts
GSE159663	DNA methylation maintains integrity of higher order genome architecture (Nanopore)
GSE162053	High throughput error correction using dual nucleotide dimer blocks allows direct single-cell nanopore transcriptome sequencing
GSE171882	RNA-Seq analysis (long-reads) of human parental M238P and BRAF inhibitors-resistant M238R melanoma cells
GSE171883	Blockade of the pro-fibrotic reaction mediated by the miR-143/-145 cluster enhances the responses to targeted therapy in melanoma
GSE172124	The pan-cancer lncRNA PLANE regulates an alternative splicing program and promotes cancer pathogenesis [ONT]
GSE172421	Long and short-read transcriptome profiling of human lung cancer cell lines
GSE174668	A multi-omics investigation on the composition and physiological function of extracellular vesicles along the temporal trajectory of COVID-19
GSE178175	Single-nuclei isoform RNA sequencing reveals combination patterns of transcript elements across human brain cell types
GSE194022	scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing [DataSet1: scNanoATAC-seq]
GSE194024	scNanoATAC-seq: Long-read Single-cell ATAC-seq by Oxford Nanopore Technologies Sequencing
GSE195631	HPV integration generates cellular super enhancer and functions as ecDNA to regulate genome-wide transcription
GSE198568	Full-length transcriptome sequencing reveals gene expression signatures in human soft tissue sarcomas
GSE201470	Inhibition of DNMT1 methyltransferase activity via glucose-regulated O-GlcNAcylation alters the epigenome
GSE202539	in situ HiPore-C reveals higher-order 3D genome folding principles
GSE204785	Full-length direct RNA sequencing uncovers stress-granule dependent RNA decay upon cellular stress
GSE204845	Single-cell multi-omics defines the cell-type specific impact of splicing aberrations in human hematopoietic clonal outgrowths
GSE206464	Nanopore sequencing combining AlphaFold2 identifies alternative splicing derived putative neoantigens in uveal melanoma
GSE208125	Protocol for Mapping Protein-DNA Interactions with Directed Methylation with Long-read Sequecing (DiMeLo-seq)
GSE208259	pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts [II]
GSE209739	Effect of PDGF, TGF-β and miR-221 on gene expression during proliferation and differentiation of human aortic smooth muscle cells
GSE212945	High throughput single cell long-read sequencing analyses of same-cell genotypes and phenotypes in human tumors.
GSE215327	Enhanced myogenesis through LncFAM-mediated recruitment of HNRNPL to the MYBPC2 promoter II
GSE215343	Enhanced myogenesis through LncFAM-mediated recruitment of HNRNPL to the MYBPC2 promoter
GSE215459	Pseudogenes limit the identification of novel common transcripts generated by their parent genes
GSE217189	scNanoHi-C: a single-cell long-read concatemer sequencing method to reveal high-order structures within individual cells
GSE218035	Long-read transcriptome sequencing reveals expression characteristics of osteosarcoma
GSE218679	Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome [Nanopore]
GSE218680	Spatially coordinated heterochromatinization of long synaptic genes in fragile X syndrome
GSE218899	Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules [RNA-seq]
GSE218901	Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules [scRNA-Seq]
GSE218903	Counting and correcting errors within unique molecular identifiers to generate absolute numbers of sequencing molecules
GSE219205	Integrated whole-exome and transcriptome sequencing indicated dysregulation of cholesterol metabolism in eyelid sebaceous gland carcinoma
GSE221053	Transposable elements as lineage-specific enhancers in endodermal-lineage cancers
GSE223088	Long-read nanopore sequencing (Nanopore-seq) of PQBP1 knockdown in ovarian cancer cells
GSE223263	Autonomous transposons tune their sequences to ensure somatic suppression.
GSE223762	Senescence-associated dysregulation of translation inhibits activation of the integrated stress response
GSE224045	Designing a single cell ATAC-Seq (scATAC-Seq) dataset to validate long read RNA-Seq isoforms and benchmark scATAC-Seq analysis methods II
GSE224453	Transposable elements as lineage-specific enhancers in endodermal-lineage cancers [NaNoME-seq]
GSE227000	Long-read transcriptome profiling of human lung cancer cell lines
GSE227911	Comprehensive Assessment of Isoform Detection Methods for Third-Generation Sequencing Data
GSE228840	COVID-19 vaccination is associated with attenuation of inflammatory responses during breakthrough disease [long-read RNA-Seq]
GSE228842	COVID-19 vaccination is associated with attenuation of inflammatory responses during breakthrough disease
GSE232307	Nuclear MTHFD2 secures centromere methylation, chromosome stability and correct mitosis progression
GSE232455	pre-mRNA splicing order is defined and maintains splicing fidelity across multi-intronic transcripts
GSE239579	Transient naive reprogramming corrects hiPS cells functionally and epigenetically [ONT DNA-seq]
GSE240568	Regulation by the RNA-binding protein Unkempt at its effector interface [Tail seq]
GSE240571	Regulation by the RNA-binding protein Unkempt at its effector interface
GSE241932	Transcriptomic profiling of ccRCC nephrectomy samples by Direct RNAseq
GSE242084	Long read transcriptome sequencing of ccRCC tumour cell line RCC4
GSE242143	DNA methylation status determines the sensitivity of repeats to restriction by the HUSH-MORC2 complex
GSE242204	Transcriptomic profiling of ccRCC nephrectomy samples by PCR-cDNAseq
GSE244655	Long read subcellular fractionation and sequencing reveals the translational fate of full length mRNA isoforms during neuronal differentiation
GSE244701	Autonomous transposons tune their sequences to ensure somatic suppression [directRNA_HEK293]
GSE248114	Accurate long-read transcript discovery and quantification at single-cell resolution with Isosceles [RNA-seq]
GSE248115	Accurate long-read transcript discovery and quantification at single-cell resolution with Isosceles [scRNA-seq]
GSE248118	Accurate long-read transcript discovery and quantification at single-cell resolution with Isosceles
GSE249799	scNanoSeq-CUT&Tag: a long-read single-cell CUT&Tag sequencing method for efficient chromatin modification profiling within individual cells
GSE250427	High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing [BCBL-1-direct-cDNA-Seq]
GSE250434	High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing [iSLK-WTBAC-PCR-cDNA-Seq]
GSE250435	High-density resolution of the Kaposi’s Sarcoma associated Herpesvirus transcriptome identifies novel transcript isoforms generated by long-range transcription and alternative splicing
GSE252534	ionizing radiation and SRSF1 knockdown in triple-negative breast cancer cells
GSE256190	Genetic regulation of nascent RNA maturation revealed by direct RNA nanopore sequencing [nanopore]
GSE259334	Targeting the CLK2/SRSF9 splicing axis in prostate cancer leads to decreased ARV7 expression in an rs5918762 allele-dependent manner (ONT long read sequencing)
GSE259335	Targeting the CLK2/SRSF9 splicing axis in prostate cancer leads to decreased ARV7 expression in an rs5918762 allele-dependent manner
GSE260827	Engineered CRISPR-Cas12a for higher-order combinatorial chromatin perturbations (Nanopore)
GSE260832	Engineered CRISPR-Cas12a for higher-order combinatorial chromatin perturbations
GSE261391	CRISPR Screening Uncovers a Long-Range Enhancer for ONECUT1 in Pancreatic Differentiation and Links a Diabetes Risk Variant [long_read_seq]
GSE262482	DNA methylation status determines the sensitivity of repeats to restriction by the HUSH-MORC2 complex [ONT whole genome DNA]
GSE262483	DNA methylation status determines the sensitivity of repeats to restriction by the HUSH-MORC2 complex [ONT cDNA sequencing]
GSE263126	Identification of hypoxia-induced isoforms and novel genes with nanopore long reads sequencing
GSE263414	Non-coding cause of congenital heart defects: Abnormal RNA splicing with multiple isoforms as a mechanism for heterotaxy
GSE264218	Sequencing-Guided Design of Genetically Encoded Small RNAs Targeting CAG Repeats for Selective Inhibition of Mutant Huntingtin [II]
GSE264444	Sequencing-Guided Design of Genetically Encoded Small RNAs Targeting CAG Repeats for Selective Inhibition of Mutant Huntingtin
GSE265867	m6ATM: a deep learning framework for demystifying m6A epitranscriptome via Nanopore long read RNA-seq data [HepG2 ]
GSE267330	CRISPR Screening Uncovers a Long-Range Enhancer for ONECUT1 in Pancreatic Differentiation and Links a Diabetes Risk Variant
GSE268488	High-resolution Hi-C reveals increased chromatin looping with senescence associated with hypomethylation and retrotransposon derepression [Long Read DNA-seq]
GSE270257	Long-Read Sequencing of an Advanced Cancer Cohort Resolves Rearrangements, Unravels Haplotypes, and Reveals Methylation Landscapes
GSE274249	Integrative analysis of long isoform sequencing and functional data identifies distinct cortical layer neuronal subtypes derived from human iPSC
GSE275424	A Novel Human Protein-Coding Locus Identified Using a Targeted RNA Enrichment Technique
GSE275636	ATF4-Mediated Metabolic Stress Response as a Therapeutic Vulnerability in Chordoma [PDX RNA-seq]
GSE275637	ATF4-Mediated Metabolic Stress Response as a Therapeutic Vulnerability in Chordoma

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