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Platform GPL2557 Query DataSets for GPL2557
Status Public on Jul 01, 2005
Title SAM1.0
Technology type spotted DNA/cDNA
Distribution non-commercial
Organism Zea mays
Manufacturer Schnable Laboratory at Iowa State University(ISU)
Manufacture protocol The ISU microarray facility have generated a maize gene chip that contains 19,200 spotted cDNA inserts.
 
 
Contributor(s) Schnable PS
Submission date Jun 19, 2005
Last update date Mar 31, 2006
Contact name Patrick S. Schnable
E-mail(s) [email protected]
Phone 515-294-0975
Organization name Iowa State University
Street address 2035B Roy J Carver Co-Lab
City Ames
State/province IA
ZIP/Postal code 50011
Country USA
 
Samples (36) GSM88631, GSM88632, GSM88633, GSM88715, GSM88716, GSM88717 
Series (4)
GSE4004 Global gene expression in the maize shoot apical meristem
GSE4722 Global gene expression analysis in the shoot apical meristem of maize
GSE6267 A global gene expression analysis in the shoot apical meristem of maize (Zea mays L.)

Data table header descriptions
ID
field Name of a field where the spot is located. In this chip there were two fields named A and B, they described the upper and lower part(location) of the chip
meta_row The number of rows of subgrids
meta_column The number of columns of subgrids
row The number of rows of spots contained within the grid
column The number of columns of spots contained within the grid
ref Plate source refer information of spots
GB_ACC GeneBank Accession Number of spots
GB_LIST List of GenBank Accession Numbers if a spot is associated with more than one number
SPOT_ID Identify the feature of spots without GB_ACC
SPOT_INFO Specifies spot category - Maize Gene, Maize Control Gene, Exogenous (Human Control Gene), Not Available for Release, No Sequence (Sequence not obtained while resequencing the spot), Unspecified (Suspected cross contamination), Empty (The original source plate well was empty or added to chip to fill the matrix) and BadPCR(Anything that didn't have one distinct band, e.g. no band, multiple bands, smears)

Data table
ID field meta_row meta_column row column ref GB_ACC GB_LIST SPOT_ID SPOT_INFO
1 A 1 1 1 1 HakeT2_V2-I-13-CB250166 CB250166 Maize Gene
2 A 1 1 1 2 HakeT2_V2-A-13-CB240017*CB239876 CB240017, CB239876 Maize Gene
3 A 1 1 1 3 HakeT2_V2-I-9-CB250153*CB250154 CB250153, CB250154 Maize Gene
4 A 1 1 1 4 HakeT2_V2-A-9-CA989253 CA989253 Maize Gene
5 A 1 1 1 5 HakeT2_V2-I-5-CB250147*CB250146 CB250147, CB250146 Maize Gene
6 A 1 1 1 6 HakeT2_V2-A-5-CA989246 CA989246 Maize Gene
7 A 1 1 1 7 HakeT2_V2-I-1-CB250136 CB250136 Maize Gene
8 A 1 1 1 8 HakeT2_V2-A-1-CA989237 CA989237 Maize Gene
9 A 1 1 1 9 HakeT1_V2-I-21-CA829787 CA829787 Maize Gene
10 A 1 1 1 10 HakeT1_V2-A-21-CA829288 CA829288 Maize Gene
11 A 1 1 1 11 HakeT1_V2-I-17-CA829615 CA829615 Maize Gene
12 A 1 1 1 12 HakeT1_V2-A-17-CA829286*CA829957 CA829286, CA829957 Maize Gene
13 A 1 1 1 13 HakeT1_V2-I-13-CA829609 CA829609 Maize Gene
14 A 1 1 1 14 HakeT1_V2-A-13-CA829952 CA829952 Maize Gene
15 A 1 1 1 15 HakeT1_V2-I-9-CA829760 CA829760 Maize Gene
16 A 1 1 1 16 HakeT1_V2-A-9-CA829283 CA829283 Maize Gene
17 A 1 1 1 17 HakeT1_V2-I-5-CA829690*CA829733 CA829690, CA829733 Maize Gene
18 A 1 1 1 18 HakeT1_V2-A-5-CA829940*CA829279 CA829940, CA829279 Maize Gene
19 A 1 1 1 19 HakeT1_V2-I-1-CA829593 CA829593 Maize Gene
20 A 1 1 1 20 HakeT1_V2-A-1-CA829927 CA829927 Maize Gene

Total number of rows: 19200

Table truncated, full table size 1307 Kbytes.






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