GEO Accession viewer

NCBI > GEO > Accession Display

Not logged in | Login

GEO help: Mouse over screen elements for information.

Platform GPL24316

Query DataSets for GPL24316

Status

Public on Feb 24, 2019

Title

Agilent-084318 B. kashiwanohense HKW46A

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Bifidobacterium catenulatum subsp. kashiwanohense

Manufacturer

Agilent Technologies

Manufacture protocol

see manufacturer's web site at http://www.agilent.com/

Description

B. kashiwanohense HKW46A Array
Arrays of this design have barcodes that begin with 16084318 or 2584318.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

Submission date

Nov 28, 2017

Last update date

Feb 24, 2019

Contact name

Kieran James

E-mail(s)

[email protected]

Organization name

APC Microbiome Institute, University College Cork

Department

Microbiology

Lab

Van Sinderen Bifidobacteria Lab,

Street address

Biosciences Institute, Gaol Cross, Western Road

City

Cork

ZIP/Postal code

T12 YT20

Country

Ireland

Samples (6)

GSM2867361, GSM2867362, GSM2867363, GSM2867364, GSM2867365, GSM2867366

Series (1)

Bifidobacterium kashiwanohense expresses fucosidases necessary for fucosyllactose utilisation as an adaptation to the infant gut environment

Data table header descriptions
ID	Agilent feature number
COL	Column
ROW	Row
NAME	NAME
CONTROL_TYPE	Control type
ACCESSION_STRING	Accession String
CHROMOSOMAL_LOCATION	Chromosomal Location
SEQUENCE	Sequence
SPOT_ID	Spot identifier

Data table
ID	COL	ROW	NAME	CONTROL_TYPE	ACCESSION_STRING	CHROMOSOMAL_LOCATION	SEQUENCE	SPOT_ID
1	266	170	GE_BrightCorner	pos				CONTROL
2	266	168	DarkCorner	pos				CONTROL
3	266	166	DarkCorner	pos				CONTROL
4	266	164	DarkCorner	pos				CONTROL
5	266	162	DarkCorner	pos				CONTROL
6	266	160	DarkCorner	pos				CONTROL
7	266	158	DarkCorner	pos				CONTROL
8	266	156	DarkCorner	pos				CONTROL
9	266	154	DarkCorner	pos				CONTROL
10	266	152	DarkCorner	pos				CONTROL
11	266	150	DarkCorner	pos				CONTROL
12	266	148	CUST_1330_PI433425686	FALSE	BKHKW46A_0180	unmapped	ATTGCGATGACCATCTGAGAAATCACGGGTTCATACGAAAAGACAGTACATGGGAGCTAT
13	266	146	CUST_6528_PI433425686	FALSE	BKHKW46A_0956	unmapped	CCGTAGCACGATTAGCCGGTGTTTGCACATGGATTAATCTGATACTGACTGGATTCAGTT
14	266	144	CUST_12166_PI433425686	FALSE	BKHKW46A_1802	unmapped	GAGACCAAAGCAATGCTGTGATGGATGGTCAAAAACTGGTCACCAATGTGGCTTATATCG
15	266	142	CUST_11231_PI433425686	FALSE	BKHKW46A_1663	unmapped	CAGCATCGAAGTACTCAACGAACCAGTGAGCTGGTCAGTGTTCCATAGCACGTCGAACAC
16	266	140	CUST_2331_PI433425686	FALSE	BKHKW46A_0321	unmapped	ACTGACCGAATTCGATGTGAAGACGATGAAGCTCAAGCCGGAAACTGAACGTACGATTTG
17	266	138	CUST_13712_PI433425686	FALSE	BKHKW46A_2019	unmapped	TTCTTCATTCCGTACACCTTGTCGGTGCTGGTGATCGGCTACGTGTTCAAGTACATTTTC
18	266	136	CUST_959_PI433425686	FALSE	BKHKW46A_0130	unmapped	CGAACACCCGACCATCGCATGGCTGGCGTTCCTCAAGCAGATCCAGCTCACGCTCAAAAC
19	266	134	CUST_1322_PI433425686	FALSE	BKHKW46A_0179	unmapped	CTGCACGACATCAATAAGCCAGGTACCACACTGGTCATCCTCTATGTGGCTAACCTCATT
20	266	132	CUST_8648_PI433425686	FALSE	BKHKW46A_1292	unmapped	TATTGCGAATAGTACGTATTATGCGGGTATTGATTTGGGTATGTCGGTTGGTCCGTTTGT

Total number of rows: 45220

Table truncated, full table size 5441 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |