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GEO help: Mouse over screen elements for information. |
|
| Status |
Public on Aug 25, 2017 |
| Title |
Agilent.SingleColor.36575, Commercial Zebrafish, 8x 60k, 60mer Microarray |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Danio rerio |
| Manufacturer |
Agilent |
| Manufacture protocol |
www.agilent.com
|
| |
|
| |
|
| Submission date |
Feb 07, 2017 |
| Last update date |
Aug 25, 2017 |
| Contact name |
Kurt A Gust |
| E-mail(s) |
[email protected]
|
| Phone |
601-634-3593
|
| Organization name |
US Army ERDC
|
| Department |
Environmental Laboratory
|
| Lab |
Environmental Genomics and Systems Biology Team
|
| Street address |
3909 Halls Ferry Rd.
|
| City |
Vicksburg |
| State/province |
MS |
| ZIP/Postal code |
39180 |
| Country |
USA |
| |
|
| Samples (130)
|
GSM2479287, GSM2479288, GSM2479289, GSM2479290, GSM2479291, GSM2479292
GSM2479293, GSM2479294, GSM2479295, GSM2479296, GSM2479297, GSM2479298, GSM2479299, GSM2479300, GSM2479301, GSM2479302, GSM2479303, GSM2479304, GSM2479305, GSM2479306, GSM2479307, GSM2479308, GSM2479309, GSM2479310, GSM2479311, GSM2479312, GSM2479313, GSM2479314, GSM2479315, GSM2479316, GSM2479317, GSM2479318, GSM2479319, GSM2479320, GSM2479321, GSM2479322, GSM2479323, GSM2479324, GSM2479325, GSM2479326, GSM2479327, GSM2479328, GSM2479329, GSM2479330, GSM2479331, GSM2479332, GSM2479333, GSM2479334, GSM2479335, GSM2479336, GSM2479337, GSM2479338, GSM2479339, GSM2479340, GSM2479341, GSM2479342, GSM2479343, GSM2479344, GSM2479345, GSM2479346, GSM2479347, GSM2479348, GSM2479349, GSM2479350, GSM2479351, GSM2479352, GSM2479353, GSM2479354, GSM2479355, GSM2479356, GSM2479386, GSM2479387, GSM2479388, GSM2479389, GSM2479390, GSM2479391, GSM2479392, GSM2479393, GSM2479394, GSM2479395, GSM2479396, GSM2479397, GSM2479398, GSM2479399, GSM2479400, GSM2479401, GSM2479411, GSM2479412, GSM2479413, GSM2479414, GSM2479415, GSM2479416, GSM2479417, GSM2479418, GSM2479419, GSM2479420, GSM2479421, GSM2479422, GSM2479423, GSM2479424, GSM2479425, GSM2479426, GSM2479460, GSM2479461, GSM2479462, GSM2479463, GSM2479464, GSM2479465, GSM2479466, GSM2479467, GSM2479468, GSM2479469, GSM2479470, GSM2479471, GSM2479472, GSM2479473, GSM2479474, GSM2479475, GSM2479476, GSM2479477, GSM2479478, GSM2479479, GSM2479480, GSM2479481, GSM2479482, GSM2479483, GSM2479484, GSM2479485, GSM2479486, GSM2479487
|
| Series (7)
|
| GSE94614 |
The Increased Toxicity of UV-Degraded Nitroguanidine and IMX-101 Exposures in Zebrafish Larvae: Evidence Implicating Oxidative Stress [1] |
| GSE94615 |
The Increased Toxicity of UV-Degraded Nitroguanidine and IMX-101 Exposures in Zebrafish Larvae: Evidence Implicating Oxidative Stress [2] |
| GSE94616 |
The Increased Toxicity of UV-Degraded Nitroguanidine and IMX-101 Exposures in Zebrafish Larvae: Evidence Implicating Oxidative Stress [3] |
| GSE94618 |
The Increased Toxicity of UV-Degraded Nitroguanidine and IMX-101 Exposures in Zebrafish Larvae: Evidence Implicating Oxidative Stress [4] |
| GSE94620 |
The Increased Toxicity of UV-Degraded Nitroguanidine and IMX-101 Exposures in Zebrafish Larvae: Evidence Implicating Oxidative Stress [5] |
| GSE94621 |
The Increased Toxicity of UV-Degraded Nitroguanidine and IMX-101 Exposures in Zebrafish Larvae: Evidence Implicating Oxidative Stress [6] |
| GSE94700 |
The Increased Toxicity of UV-Degraded Nitroguanidine and IMX-101 Exposures in Zebrafish Larvae: Evidence Implicating Oxidative Stress |
|
| Data table header descriptions |
| ID |
|
| Description |
|
| SEQUENCE |
|
| accessions |
|
| chromosome |
|
| chr_coord |
|
| ControlType |
|
| end_position_on_the_genomic_accession |
|
| Entrez Gene |
|
| FeatureNum |
|
| GeneID |
|
| GeneName |
|
| GO_Avadis_ |
|
| GO_ID_Component |
|
| GO_ID_Function |
|
| GO_ID_Process |
|
| orientation |
|
| ProbeUID |
|
| protein_accession.version |
|
| PubMed |
|
| RNA_nucleotide_accession.version |
|
| Start |
|
| start_position_on_the_genomic_accession |
|
| ORF |
|
| Synonyms |
|
| SystematicName |
|
| UniGene_cluster |
|
| SPOT_ID |
|
| GB_ACC |
|
| Data table |
| ID |
Description |
SEQUENCE |
accessions |
chromosome |
chr_coord |
ControlType |
end_position_on_the_genomic_accession |
Entrez Gene |
FeatureNum |
GeneID |
GeneName |
GO_Avadis_ |
GO_ID_Component |
GO_ID_Function |
GO_ID_Process |
orientation |
ProbeUID |
protein_accession.version |
PubMed |
RNA_nucleotide_accession.version |
Start |
start_position_on_the_genomic_accession |
ORF |
Synonyms |
SystematicName |
UniGene_cluster |
SPOT_ID |
GB_ACC |
| GE_BrightCorner |
|
|
|
|
null |
1 |
|
|
163.0///62649.0///62648.0///1.0///165.0///62321.0///164.0///62812.0///62813.0///62814.0///62976.0///328.0///62647.0///62975.0 |
|
GE_BrightCorner |
|
|
|
|
|
|
|
|
|
|
|
|
|
GE_BrightCorner |
|
CONTROL |
|
| DarkCorner |
|
|
|
|
null |
1 |
|
|
3.0///820.0///62650.0///2.0///61992.0///657.0///62485.0///492.0///327.0///62815.0///62157.0///656.0///329.0///62974.0///62646.0///62811.0///62483.0///162.0///655.0///62651.0///61993.0///166.0///62322.0///62320.0///62484.0///493.0///326.0///984.0///62486.0///491.0///62319.0///62973.0///62156.0///62810.0///330.0 |
|
DarkCorner |
|
|
|
|
|
1 |
|
|
|
|
|
|
|
DarkCorner |
|
CONTROL |
|
| A_15_P516687 |
gb|fc03g10.x1 Zebrafish WashU MPIMG EST Danio rerio cDNA clone IMAGE:3720354 3', mRNA sequence [AI601722] |
GATACAGCTGTTGATACGCACATTGATATAGCATCATTTTTGTGACACTGTAAAACAACA |
gb|AI601722 |
|
dr|chr19:031683182-031683123 |
0 |
|
|
15348.0///4.0 |
|
wu:fc03g10 |
|
|
|
|
|
3 |
|
|
|
397 |
|
|
|
AI601722 |
|
|
AI601722 |
| A_15_P112259 |
ref|Danio rerio RAB6B, member RAS oncogene family (rab6b), mRNA [NM_001034179] |
TGTGAATTCGTTTCAACAAACTTCCAAATGGATCGATGACGTGAGAACGGAGCGAGGAAG |
ref|NM_001034179|ens|ENSDART00000127126|ens|ENSDART00000049177|gb|BC080215 |
|
dr|chr6:27526808-27526867 |
0 |
|
|
5 |
|
rab6b |
|
|
|
|
|
5 |
|
|
|
418 |
|
|
|
NM_001034179 |
|
|
NM_001034179 |
| A_15_P767171 |
ens|Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:F1QUM9] [ENSDART00000129564] |
GAAAAGAGTTTCATCTATAAAACTCAGCTGGACATTCACATGAGAGTTCACACCAAAGAA |
ens|ENSDART00000129564|gb|EH583440|tc|TC391973|tc|TC390843 |
|
dr|chr3:31246855-31246914 |
0 |
|
|
6.0///56917.0 |
|
ENSDART00000129564 |
|
|
|
|
|
7 |
|
|
|
1041 |
|
|
|
ENSDART00000129564 |
|
|
|
| A_15_P753206 |
ref|Danio rerio si:ch211-198a12.6 (si:ch211-198a12.6), mRNA [NM_001145579] |
CTAGTCTGTATCTTTTACCCATTTCTGTGTTATTAATGGGTTGAGAAACTGATATCGTGT |
ref|NM_001145579|ens|ENSDART00000114368|gb|BC146743|ens|ENSDART00000142622 |
13 |
dr|chr13:18560477-18560536 |
0 |
18381843 |
563253 |
49856.0///7.0 |
563253 |
si:ch211-198a12.6 |
GO:0003676|GO:0046872 |
|
GO:0046872|GO:0003676 |
|
+ |
9 |
NP_001139051.1 |
|
NM_001145579.1 |
2246 |
18376599 |
si:ch211-198a12.6 |
id:ibd2708|wu:fa08f12|wu:fb72e11|wu:fb77h12|wu:fc06d05|wu:fe14e05 |
NM_001145579 |
|
|
NM_001145579 |
| A_15_P598112 |
ens|pleckstrin homology domain containing, family A member 5 [Source:HGNC Symbol;Acc:30036] [ENSDART00000112210] |
GTGTAAAGTTGATGATGTAAATATACTGTACACCGGACTAAATGAGCAGAGCCGAGCCGA |
ens|ENSDART00000112210|ens|ENSDART00000067414|gb|BC155854|ens|ENSDART00000127894 |
4 |
dr|chr4:2819239-2819180 |
0 |
3215263 |
567300 |
8 |
567300 |
plekha5 |
|
|
|
|
|
11 |
XP_005164531.1 |
|
XM_005164474.2 |
4349 |
3017953 |
plekha5 |
si:ch211-239h19.1|wu:fb16e08 |
ENSDART00000112210 |
|
|
|
| A_15_P391760 |
ens|anaphase promoting complex subunit 1 [Source:HGNC Symbol;Acc:19988] [ENSDART00000140045] |
CATCTTACATCAACTTTTTATTGCATGAAGTTGTTATGACATCGATGAGATCGGATGCTC |
ens|ENSDART00000140045|gb|XM_001921133|tc|TC407452|tc|TC417171 |
|
dr|chr13:47633669-47633728 |
0 |
|
|
22253.0///9.0 |
|
ENSDART00000140045 |
|
|
|
|
|
13 |
|
|
|
4104 |
|
|
|
ENSDART00000140045 |
|
|
|
| A_15_P736306 |
ref|Danio rerio mitochondrial ribosomal protein L44 (mrpl44), nuclear gene encoding mitochondrial protein, mRNA [NM_001030260] |
TTCACTACGGGTTTCCTGAGTGACTGGTGCAAAAACAGCTTTCCTAATCTTCCTGATGAG |
ref|NM_001030260|gb|BC133990|gb|BC097173|ens|ENSDART00000099600 |
15 |
dr|chr15:34517546-34513871 |
0 |
35366511 |
571210 |
31166.0///10.0 |
571210 |
mrpl44 |
GO:0090502|GO:0005634|GO:0004525|GO:0003723|GO:0031053|GO:0031054|GO:0003725|GO:0006396|GO:0030422 |
GO:0005634 |
GO:0004525|GO:0003725|GO:0003723 |
GO:0090502|GO:0031054|GO:0031053|GO:0030422|GO:0006396 |
|
15 |
NP_001025431.2 |
|
NM_001030260.2 |
468 |
35356576 |
mrpl44 |
zgc:114114 |
NM_001030260 |
Dr.2483 |
|
NM_001030260 |
| A_15_P750011 |
ens|tubulin, gamma complex associated protein 6 [Source:HGNC Symbol;Acc:18127] [ENSDART00000122952] |
TCATATAAGGGTTGGCGAACACGTTTCTGAGGTGACCACTCATATTCCTACGGCTAACAT |
ens|ENSDART00000122952|tc|TC421782|ref|XM_002667001 |
|
dr|chr25:6013997-6014055 |
0 |
|
|
11.0///23097.0 |
|
ENSDART00000122952 |
|
|
|
|
|
17 |
|
|
|
2049 |
|
|
|
ENSDART00000122952 |
|
|
|
| A_15_P107444 |
ref|Danio rerio DEAD (Asp-Glu-Ala-Asp) box polypeptide 59 (ddx59), mRNA [NM_001044978] |
CTTCCCAACATGAGGACAGCTCTTCTGGTCGGTGGGATGCCTCTACCTCCACAACTGCAT |
ref|NM_001044978|ens|ENSDART00000123083|ens|ENSDART00000105600|gb|BC139521 |
22 |
dr|chr22:22785468-22785527 |
0 |
22402924 |
562123 |
12 |
562123 |
ddx59 |
GO:0003676|GO:0000166|GO:0005524|GO:0010501|GO:0004386|GO:0016787|GO:0004004 |
|
GO:0016787|GO:0005524|GO:0004386|GO:0004004|GO:0003676|GO:0000166 |
GO:0010501 |
+ |
19 |
NP_001038443.2 |
|
NM_001044978.2 |
833 |
22393316 |
ddx59 |
si:dkey-39e8.2 |
NM_001044978 |
|
|
NM_001044978 |
| A_15_P191751 |
ens|si:ch211-76m11.3 [Source:ZFIN;Acc:ZDB-GENE-041210-276] [ENSDART00000131380] |
GGAGTTTGCTCTGTGATTCCTCCAGTTTCATATTCTGGCACAATCACACAGACACTGATC |
ens|ENSDART00000131380|ens|ENSDART00000128076|ens|ENSDART00000143779|ens|ENSDART00000147136 |
|
dr|chr1:37688565-37688624 |
0 |
|
|
13 |
|
ENSDART00000131380 |
|
|
|
|
|
21 |
|
|
|
2656 |
|
|
|
ENSDART00000131380 |
|
|
|
| A_15_P724626 |
ref|Danio rerio lysine (K)-specific demethylase 4B (kdm4b), mRNA [NM_001082805] |
ATTGATTCCCTTTGCATTACTTGTGAACACTTGCATTAATTTGACAGCGCTTCTGTTTAT |
ref|NM_001082805|ens|ENSDART00000128161|tc|TC366382 |
22 |
dr|chr22:3980648-3980707 |
0 |
3955023 |
556504 |
14.0///49687.0 |
556504 |
kdm4b |
GO:0005634|GO:0008270|GO:0046872 |
GO:0005634 |
GO:0046872|GO:0008270 |
|
|
23 |
XP_009294210.1 |
|
XM_009295935.1 |
4847 |
3862407 |
kdm4b |
jmjd2b|si:ch211-124a3.4 |
NM_001082805 |
|
|
NM_001082805 |
| A_15_P761351 |
tc|GB|XM_692903.2|XP_697995.2 similar to Uncharacterized protein C14orf166B homolog [NP13324797] |
ATGAGGTCATATTCGCAGCCAAATCTGTTTGCTAGTATGCCCAAAACGGTCTCTAGCAAG |
tc|NP13324797 |
|
dr|chr17:53126648-53126589 |
0 |
|
|
15 |
|
NP13324797 |
|
|
|
|
|
25 |
|
|
|
1719 |
|
|
|
NP13324797 |
|
|
|
| A_15_P730451 |
ref|Danio rerio heat shock protein 8 (hspa8), mRNA [NM_001110403] |
AGGGAACAGACTTTCTACCTAGATTGCACAGCTTAAACTTGTGACGTTTCACAAGCCTTT |
ref|NM_001110403|ens|ENSDART00000141549|ens|ENSDART00000099994|gb|Y11413 |
10 |
dr|chr10:30761348-30761407 |
0 |
29967369 |
573376 |
16 |
573376 |
hspa8 |
GO:0000166|GO:0005524|GO:0031101 |
|
GO:0005524|GO:0000166 |
GO:0031101 |
+ |
27 |
NP_001103873.1 |
22278371 |
NM_001110403.1 |
2214 |
29963157 |
hspa8 |
hsc70|wu:fb01g06|wu:fi48b06 |
NM_001110403 |
|
|
NM_001110403 |
| A_15_P399930 |
ref|Danio rerio PITP-less RdgB-like protein (plrdgb), mRNA [NM_131575] |
ACATGGTCACTCTAACAGGAGAGAAGGTGGATGTGTTTTTAAAGACTCAGTCTGGGTCTG |
ref|NM_131575|gb|AF230807|tc|TC366486 |
21 |
unmapped |
0 |
39849372 |
58096 |
17 |
58096 |
plrdgb |
GO:0046872|GO:0006810|GO:0005622 |
GO:0005622 |
GO:0046872 |
GO:0006810 |
+ |
29 |
NP_571650.1 |
|
NM_131575.1 |
2131 |
39681931 |
plrdgb |
si:ch1073-443k13.2 |
NM_131575 |
|
|
NM_131575 |
| A_15_P207471 |
ref|Danio rerio deltaB (dlb), mRNA [NM_130958] |
CAGGTTGCAGTACTCTATATGAAGAGGACTGATGTCTTTATATAAAGATGAAGAAGTGTG |
ref|NM_130958|ens|ENSDART00000019259|gb|BC076414|gb|AF006488 |
5 |
dr|chr5:38301250-38301309 |
0 |
36101606 |
30141 |
18 |
30141 |
dlb |
GO:0030901|GO:0007219|GO:0007275|GO:0007154|GO:0005509|GO:0016020|GO:0030154|GO:0016021|GO:0007399|GO:0021536 |
GO:0016021|GO:0016020 |
GO:0005509 |
GO:0030901|GO:0030154|GO:0021536|GO:0007399|GO:0007275|GO:0007219|GO:0007154 |
+ |
31 |
NP_571033.1 |
21148001 |
NM_130958.1 |
2331 |
36093735 |
dlb |
etID309872.5|sc:d0400 |
NM_130958 |
Dr.574 |
|
NM_130958 |
| A_15_P678361 |
ref|Danio rerio asparagine-linked glycosylation 14 homolog (S. cerevisiae) (alg14), mRNA [NM_001006092] |
CTGACTACTTCTTTGTGCAGTGGGCACAGCTCAAAGAACAATACCCAAATGCCATCTACA |
ref|NM_001006092|ens|ENSDART00000057999|gb|BC083226|gb|CN500320 |
24 |
dr|chr24:31343507-31343566 |
0 |
31285993 |
450072 |
19 |
450072 |
alg14 |
GO:0016020|GO:0016021 |
GO:0016021|GO:0016020 |
|
|
|
33 |
NP_001006092.1 |
|
NM_001006092.1 |
758 |
31263993 |
alg14 |
zgc:101623 |
NM_001006092 |
|
|
NM_001006092 |
| A_15_P180136 |
ref|Danio rerio solute carrier family 45, member 3 (slc45a3), mRNA [NM_001098195] |
AGTGTCGTGGCTGTGTATTTCTCCAGTAAGATTGTCTTTGAGAAGGCGGATATTGATGCA |
ref|NM_001098195|ens|ENSDART00000113894|gb|BC139661|tc|TC423275 |
11 |
dr|chr11:39752620-39752561 |
0 |
38266299 |
100049157 |
59465.0///20.0 |
100049157 |
slc45a3 |
GO:0055085|GO:0016020|GO:0016021|GO:0003674 |
GO:0016021|GO:0016020 |
GO:0003674 |
GO:0055085 |
|
35 |
XP_005169460.1 |
|
XM_005169403.2 |
1787 |
38250059 |
slc45a3 |
zgc:162897 |
NM_001098195 |
|
|
NM_001098195 |
| A_15_P153241 |
ref|Danio rerio immunoglobulin-like domain containing receptor 1a (ildr1a), mRNA [NM_200393] |
TTATAATACACTATACAGTGCACTATAACAGCAGCTCGGAGCCTCTGTGATGATGGACCG |
ref|NM_200393|ens|ENSDART00000131042|gb|CU458974|gb|BC053314 |
1 |
dr|chr1:570835-570894 |
0 |
49830 |
393364 |
21 |
393364 |
ildr1a |
GO:0016020|GO:0016021|GO:0003674 |
GO:0016021|GO:0016020 |
GO:0003674 |
|
|
37 |
NP_956687.1 |
|
NM_200393.1 |
1900 |
44838 |
ildr1a |
zgc:64227 |
NM_200393 |
|
|
NM_200393 |
Total number of rows: 43659
Table truncated, full table size 19218 Kbytes.
| Supplementary data files not provided |
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