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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Nov 29, 2016 |
| Title |
BaSysBio Bacillus subtilis T3 400K array |
| Technology type |
in situ oligonucleotide |
| Distribution |
custom-commercial |
| Organism |
Bacillus subtilis subsp. subtilis str. 168 |
| Manufacturer |
Agilent Technologies |
| Manufacture protocol |
The arrays are produced by Agilent Technologies SurePrint technology (for details, see manufacturer's web site).
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| Submission date |
Jun 03, 2016 |
| Last update date |
Oct 25, 2016 |
| Contact name |
Ulrike Mäder |
| E-mail(s) |
[email protected]
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| Organization name |
University Medicine Greifswald
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| Department |
Functional Genomics
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| Street address |
F.-L.-Jahn-Str. 15A
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| City |
Greifswald |
| ZIP/Postal code |
D-17489 |
| Country |
Germany |
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| Samples (43)
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GSM2187096, GSM2187097, GSM2187098, GSM2187099, GSM2187100, GSM2187101
GSM2187102, GSM2187103, GSM2187104, GSM2187105, GSM2187106, GSM2187107, GSM4306941, GSM4306942, GSM4306943, GSM4306944, GSM4306945, GSM4306946, GSM4306947, GSM4306948, GSM4306949, GSM4306950, GSM4306951, GSM4306952, GSM4743303, GSM4743304, GSM4743305, GSM4743306, GSM4743307, GSM4743308, GSM4743309, GSM4743310, GSM4743311, GSM4743312, GSM4743313, GSM4743314, GSM5724096, GSM5724097, GSM5724098, GSM5724099, GSM5724100, GSM5724101, GSM5724102
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| Series (4)
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| GSE82249 |
Transcriptome analysis of genome-reduced Bacillus subtilis strains |
| GSE145124 |
Impact of high salinity and the compatible solute glycine betaine on global gene expression of Bacillus subtilis |
| GSE156738 |
A global transcription study of the regulatory effects of potassium, glutamate and c-di-AMP in Bacillus subtilis |
| GSE190460 |
Temporal transcriptome analysis of Bacillus subtilis NDmed in the submerged biofilm model |
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| Data table header descriptions |
| ID |
|
| GeneName |
Gene name as in AL009126.3 |
| LocusTag |
Locus tag of the CDS or coordinates of the RNA feature (Nicolas et al., 2012; PMID 22383849) |
| GeneStart |
Start position as in AL009126.3 |
| GeneEnd |
End position as in AL009126.3 |
| GeneStrand |
Strand as in AL009126.3 |
| ORF |
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| SPOT_ID |
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| Data table |
| ID |
GeneName |
LocusTag |
GeneStart |
GeneEnd |
GeneStrand |
ORF |
SPOT_ID |
| 1 |
dnaA |
BSU00010 |
410 |
1750 |
1 |
BSU00010 |
|
| 2 |
dnaN |
BSU00020 |
1939 |
3075 |
1 |
BSU00020 |
|
| 3 |
yaaA |
BSU00030 |
3206 |
3421 |
1 |
BSU00030 |
|
| 4 |
recF |
BSU00040 |
3437 |
4549 |
1 |
BSU00040 |
|
| 5 |
yaaB |
BSU00050 |
4567 |
4812 |
1 |
BSU00050 |
|
| 6 |
gyrB |
BSU00060 |
4867 |
6783 |
1 |
BSU00060 |
|
| 7 |
gyrA |
BSU00070 |
6994 |
9459 |
1 |
BSU00070 |
|
| 8 |
guaB |
BSU00090 |
15915 |
17381 |
1 |
BSU00090 |
|
| 9 |
dacA |
BSU00100 |
17534 |
18865 |
1 |
BSU00100 |
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| 10 |
pdxS |
BSU00110 |
19062 |
19946 |
1 |
BSU00110 |
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| 11 |
pdxT |
BSU00120 |
19968 |
20558 |
1 |
BSU00120 |
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| 12 |
NA |
BSU_misc_RNA_1 |
20611 |
20823 |
1 |
|
BSU_misc_RNA_1 |
| 13 |
serS |
BSU00130 |
20880 |
22157 |
1 |
BSU00130 |
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| 14 |
tadA |
BSU00180 |
25852 |
26337 |
1 |
BSU00180 |
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| 15 |
scr |
BSU_misc_RNA_2 |
26533 |
26635 |
1 |
|
BSU_misc_RNA_2 |
| 16 |
dnaX |
BSU00190 |
26814 |
28505 |
1 |
BSU00190 |
|
| 17 |
yaaK |
BSU00200 |
28529 |
28852 |
1 |
BSU00200 |
|
| 18 |
recR |
BSU00210 |
28867 |
29463 |
1 |
BSU00210 |
|
| 19 |
yaaL |
BSU00220 |
29481 |
29705 |
1 |
BSU00220 |
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| 20 |
bofA |
BSU00230 |
29772 |
30035 |
1 |
BSU00230 |
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Total number of rows: 5737
Table truncated, full table size 296 Kbytes.
| Supplementary data files not provided |
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