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Platform GPL21560 Query DataSets for GPL21560
Status Public on Sep 01, 2017
Title 100718_Zv7_EXPR_HX12 NimbleGen Zebrafish 12x135K array
Technology type spotted oligonucleotide
Distribution custom-commercial
Organism Danio rerio
Manufacturer NimbleGen
Manufacture protocol The high-density DNA microarray was prepared by Maskless Array Synthesizer (MAS) technology.
 
Description Design Name=100718_Zv7_EXPR_HX12, Barcode=537809, A multiplex format of 12 arrays each of which contains 135,000 of 60-mer oligonucleotide probes covering 38,489 targets (i.e., 3 probes per target).
 
Submission date Mar 03, 2016
Last update date Aug 11, 2022
Contact name Jennifer Freeman
E-mail(s) [email protected]
Organization name Purdue University
Department School of Health Sciences
Street address 550 Stadium Mall Drive
City West Lafayette
State/province IN
ZIP/Postal code 47907
Country USA
 
Samples (24) GSM2080380, GSM2080381, GSM2080382, GSM2080383, GSM2080384, GSM2080385 
Series (4)
GSE78879 Embryonic exposure to 100 µg/L lead results in sex-specific expression changes in genes associated with neurological system and cancer in the aged adult zebrafish brain [male]
GSE78880 Embryonic exposure to 100 µg/L lead results in sex-specific expression changes in genes associated with neurological system and cancer in the aged adult zebrafish brain [female]
GSE78881 Embryonic exposure to 100 µg/L lead results in sex-specific expression changes in genes associated with neurological system and cancer in the aged adult zebrafish brain

Data table header descriptions
ID NimbleGen probe identifier
SEQ_ID
SEQUENCE
UNIGENE CLUSTER ID
ZV7 CHROMOSOME
START BP
END BP
ZEBRAFISH GENE DESCRIPTION
HUMAN ORTHOLOG GENE SYMBOL
URL
SPOT_ID

Data table
ID SEQ_ID SEQUENCE UNIGENE CLUSTER ID ZV7 CHROMOSOME START BP END BP ZEBRAFISH GENE DESCRIPTION HUMAN ORTHOLOG GENE SYMBOL URL SPOT_ID
AA494792P00367 AA494792 TGAGTCTGTCTGTAAGGCACGGCTTCATATAAACGCACCTTAAGTCTGGAAAGATCTGAG Dr.119676;Dr.75215 ERG http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494792
AA494792P00131 AA494792 GAGGCCGTGAGCTTCTGTGAGCAGCCGTCAGACAGAGTCTAGGACTAACGCCTGATTGGC Dr.119676;Dr.75215 ERG http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494792
AA494792P00256 AA494792 AACACTGAATAGTATACTTCAATCTAACAAACGCACAGCGTCGCGACTCGGAACATTGTC Dr.119676;Dr.75215 ERG http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494792
AA494792_RP00316 AA494792_R CCTCAGCCTGACTGACCCACAGCAGGGCACACACACGGCCTGAGACTGCTGACAAAGGGA Dr.119676;Dr.75215 ERG http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494792
AA494792_RP00016 AA494792_R TTCTTGACCTCAGATCTTTCCAGACTTAAGGTGCGTTTATATGAAGCCGTGCCTTACAGA Dr.119676;Dr.75215 ERG http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494792
AA494800P00225 AA494800 CTGTTTCAGTGAGGTGTAATGGTTACATCACTTCTAAAGTCAATACAGATAATGACATGT http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494800
AA494800P00083 AA494800 ATAAAACTGCTTTTAGTCTCGTATATATTCTGACACTAAAGATGACTCTCTGGAGTACAG http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494800
AA494800P00182 AA494800 TACAAATACAGTAAATAGATGGATACAGAGCGACTGCAAAAACCTGTTTCAGTGAGGTGT http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494800
AA494800_RP00196 AA494800_R TAAGCTGTACTCCAGAGAGTCATCTTTAGTGTCAGAATATATACGAGACTAAAAGCAGTT http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494800
AA494800_RP00049 AA494800_R TTTTATACAACATGTCATTATCTGTATTGACTTTAGAAGTGATGTAACCATTACACCTCA http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494800
AA494831P00317 AA494831 AAGAAACTCAAGCAGATGATTGTGACTCTGTCGTGCAAAGGGCCCTGGCAGGGAAAGGAA http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494831
AA494831P00131 AA494831 TTGTGTTGCTCAAGTATGCATAAACATAGAAACTGTGACATAATGACCTGTTGTTCAGCC http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494831
AA494831P00244 AA494831 CAGTTCAGCCCTTGTTCCGACTGGAGTGTGATATCCAACATTGGCGGCAATGTCTACAGT http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494831
AA494831_RP00096 AA494831_R CTGTAGACATTGCCGCCAATGTTGGATATCACACTCCAGTCGGAACAAGGGCTGAACTGT http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494831
AA494831_RP00020 AA494831_R ACTTCCTTTCCCTGCCAGGGCCCTTTGCACGACAGAGTCACAATCATCTGCTTGAGTTTC http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494831
AA494944P00288 AA494944 TGAGGATTCATTTACCTCAAATAGGAAGAACTCGATCCTTTGCAAATCTTGAATGGAATG Dr.448 DVL3 /// LPL http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494944
AA494944P00309 AA494944 TAGGAAGAACTCGATCCTTTGCAAATCTTGAATGGAATGAAATGAGATCAGCATTAATTT Dr.448 DVL3 /// LPL http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494944
AA494944P00298 AA494944 TTTACCTCAAATAGGAAGAACTCGATCCTTTGCAAATCTTGAATGGAATGAAATGAGATC Dr.448 DVL3 /// LPL http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494944
AA494944_RP00119 AA494944_R CTATTTGAGGTAAATGAATCCTCATTTAAGGACTTGTGTTGTGTGAGGTGAGTTCTGCTA Dr.448 DVL3 /// LPL http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494944
AA494944_RP00062 AA494944_R AAATTAATGCTGATCTCATTTCATTCCATTCAAGATTTGCAAAGGATCGAGTTCTTCCTA Dr.448 DVL3 /// LPL http://www.ncbi.nlm.nih.gov/sites/entrez?db=gene&cmd=search&term=AA494944

Total number of rows: 140663

Table truncated, full table size 29540 Kbytes.




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Supplementary file Size Download File type/resource
GPL21560_100718_Zv7_EXPR.ndf.gz 8.0 Mb (ftp)(http) NDF
GPL21560_100718_Zv7_EXPR.ngd.gz 1.9 Mb (ftp)(http) NGD
GPL21560_100718_Zv7_EXPR_HX12.ncd.gz 306 b (ftp)(http) NCD

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