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Platform GPL19718 Query DataSets for GPL19718
Status Public on Jan 31, 2015
Title IIllumina Infinium human CytoSNP-850K BeadChip
Technology type oligonucleotide beads
Distribution custom-commercial
Organism Homo sapiens
Manufacturer Illumina, Inc.
Manufacture protocol See manufacturer's website
 
 
Submission date Jan 29, 2015
Last update date Jan 31, 2015
Contact name Wigard Kloosterman
E-mail(s) [email protected]
Organization name University Medical Center Utrecht
Street address Universiteitsweg 100
City Utrecht
ZIP/Postal code 3584 CG
Country Netherlands
 
Samples (176) GSM1597951, GSM1597952, GSM1597953, GSM1597954, GSM1597955, GSM1834110 
Series (15)
GSE65451 Chromothripsis in healthy individuals affects multiple protein-coding genes and can result in severe congenital abnormalities in offspring [case 1]
GSE65454 Chromothripsis in healthy individuals affects multiple protein-coding genes and can result in severe congenital abnormalities in offspring.
GSE71429 Infinium 850k Beadchip analysis of control human brain for copy number mosaicism

Data table header descriptions
ID Name
SPOT_ID IlmnID
IlmnStrand
SNP SNP
AddressA_ID
SEQUENCE AlleleA_ProbeSeq
AddressB_ID
SEQUENCE AlleleB_ProbeSeq
GenomeBuild
Chr
MapInfo
Ploidy
Species
Source
SourceVersion
SourceStrand
SourceSeq
TopGenomicSeq
BeadSetID
Exp_Clusters
RefStrand
SPOT_ID

Data table
ID SPOT_ID IlmnStrand SNP AddressA_ID SEQUENCE AddressB_ID SEQUENCE GenomeBuild Chr MapInfo Ploidy Species Source SourceVersion SourceStrand SourceSeq TopGenomicSeq BeadSetID Exp_Clusters RefStrand SPOT_ID
200003 200003-0_B_R_1852966091 BOT [T/C] 16793901 GCCAGCTTCGTTGTCTTCCTCGTGGCCGAGAAGTCCACCAAGGCCAAGCA 37.1 9 139906359 diploid Homo sapiens ILLUMINA 0 TOP GTCCCACACGTAGTTCGCCAGCCAGTAGATGATGGGGTTGCAGCCGCTGACAAACTGCAG[A/G]TGCTTGGCCTTGGTGGACTTCTCGGCCACGAGGAAGACAACGAAGCTGGCCGGCACGAAG GTCCCACACGTAGTTCGCCAGCCAGTAGATGATGGGGTTGCAGCCGCTGACAAACTGCAG[A/G]TGCTTGGCCTTGGTGGACTTCTCGGCCACGAGGAAGACAACGAAGCTGGCCGGCACGAAG 834 3 -
200199 200199-0_B_R_1852966097 BOT [G/C] 79627404 AGGGCTCCTGAGGTATGTCTCCATGAAAATGATCATATGGAGAAATGACG 29751596 AGGGCTCCTGAGGTATGTCTCCATGAAAATGATCATATGGAGAAATGACC 37.1 22 42517989 diploid Homo sapiens ILLUMINA 0 TOP AATTCATCCAAATTTTCTGCCAAAAATAGAAATCTCTTTGCAGTACATTTAGACAGATCA[C/G]GTCATTTCTCCATATGATCATTTTCATGGAGACATACCTCAGGAGCCCTCCATCTCCCTG AATTCATCCAAATTTTCTGCCAAAAATAGAAATCTCTTTGCAGTACATTTAGACAGATCA[C/G]GTCATTTCTCCATATGATCATTTTCATGGAGACATACCTCAGGAGCCCTCCATCTCCCTG 834 3 -
200610-249 200610-249-0_T_F_1867864479 TOP [A/G] 21760522 TCTCCTGTAAAGTAATAAACCTACATGCAAAAATAAGGATGCAGGGGGAG 37.1 Y 2658869 diploid Homo sapiens BGI 0 TOP AAGTGTTGGTTCTCCTGTAAAGTAATAAACCTACATGCAAAAATAAGGATGCAGGGGGAG[A/G]CCGAGAGCATTAAATTTGCCTCTATAATATCATATCAACACATTTTAATCTCTCAACCAG AAGTGTTGGTTCTCCTGTAAAGTAATAAACCTACATGCAAAAATAAGGATGCAGGGGGAG[A/G]CCGAGAGCATTAAATTTGCCTCTATAATATCATATCAACACATTTTAATCTCTCAACCAG 834 2 +
200610-252 200610-252-0_B_F_1867864485 BOT [T/C] 25808913 TTTCTACTCAAACCTTGTTCAGGTCACAAAGAAGCTACAGATGAAGAACA 37.1 Y 2661836 diploid Homo sapiens BGI 0 BOT GGAGAAGTTATTTCTACTCAAACCTTGTTCAGGTCACAAAGAAGCTACAGATGAAGAACA[T/C]GAAAAAATTGTTGGTTAAAATAAAACTATAACTAGGCTTATTTACGGTGAGTAATTTCTT AAGAAATTACTCACCGTAAATAAGCCTAGTTATAGTTTTATTTTAACCAACAATTTTTTC[A/G]TGTTCTTCATCTGTAGCTTCTTTGTGACCTGAACAAGGTTTGAGTAGAAATAACTTCTCC 834 2 +
200610-304 200610-304-0_T_R_1867864542 TOP [C/G] 4791216 TCTATCAGACCATGGTAATCTCATAGGTCTCTGACTGTTCAGTTTTATTC 96713175 TCTATCAGACCATGGTAATCTCATAGGTCTCTGACTGTTCAGTTTTATTG 37.1 Y 14814060 diploid Homo sapiens BGI 0 BOT AAGAATTAAAACAATAGTTTTAGCAGTTTGGGTAAGAGATGTTTACAGAAATGTTTTGTG[C/G]AATAAAACTGAACAGTCAGAGACCTATGAGATTACCATGGTCTGATAGAGGGGCAGCTAA TTAGCTGCCCCTCTATCAGACCATGGTAATCTCATAGGTCTCTGACTGTTCAGTTTTATT[C/G]CACAAAACATTTCTGTAAACATCTCTTACCCAAACTGCTAAAACTATTGTTTTAATTCTT 834 2 -
200610_403 200610_403-0_T_F_1867864653 TOP [A/C] 4659339 GGCGCCATCGCCGTGGACCGCTACATCTCCATCTTCTACGCACTGCGCTA 37.1 16 89986122 diploid Homo sapiens BGI 0 TOP TGACGTGATCACCTGCAGCTCCATGCTGTCCAGCCTCTGCTTCCTGGGCGCCATCGCCGTGGACCGCTACATCTCCATCTTCTACGCACTGCGCTA[A/C]CACAGCATCGTGACCCTGCCGCGGGCGCGGCGAGCCGTTGCGGCCATCTGGGTGGCCAGTGTCGTCTTCAGCACGCTCTTCATCGCCTACTACGACCACGTGG TGACGTGATCACCTGCAGCTCCATGCTGTCCAGCCTCTGCTTCCTGGGCGCCATCGCCGTGGACCGCTACATCTCCATCTTCTACGCACTGCGCTA[A/C]CACAGCATCGTGACCCTGCCGCGGGCGCGGCGAGCCGTTGCGGCCATCTGGGTGGCCAGTGTCGTCTTCAGCACGCTCTTCATCGCCTACTACGACCACGTGG 834 3 +
2010-08-Y-2961 2010-08-Y-2961-0_T_R_1867867062 TOP [A/G] 47748167 ATTTGATTCCATTTTTTTCCACTTGATTCGATTTGATTTGGTTCCTTGTG 37.1 Y 27194291 diploid Homo sapiens BGI 0 BOT tggagtggagtggaatggagtggaatggaaaggggtggaatggaattgaatggagtggaggggagtgctgtggagggaactggagtggaatagaatggaatgggaaggaatggaattgaatggagtggagtggagtagagtggagtgcaggggagtggagtggagagtagtagaatggattggagtggaatggagtggagtgaaatggaatggaatggaatgaactggaatggaatggaatggaatcgaa[T/C]cacaaggaaccaaatcaaatcgaatcaagtggaaaaaaatggaatcaaatggaaatgatcgaatgaattcgaatggcatcaaatggaatcgaatggaatgtgttgaagtggagtggaatggagagcaatggaatggaatggaatgcagtggaatagaattgaatggagtggagtggagtggactggagtagaatggaaaggaatgggaaggaatggaattgaacggagaggagtagagtggagtagagtg cactctactccactctactcctctccgttcaattccattccttcccattcctttccattctactccagtccactccactccactccattcaattctattccactgcattccattccattccattgctctccattccactccacttcaacacattccattcgattccatttgatgccattcgaattcattcgatcatttccatttgattccatttttttccacttgattcgatttgatttggttccttgtg[A/G]ttcgattccattccattccattccagttcattccattccattccatttcactccactccattccactccaatccattctactactctccactccactcccctgcactccactctactccactccactccattcaattccattccttcccattccattctattccactccagttccctccacagcactcccctccactccattcaattccattccacccctttccattccactccattccactccactcca 834 2 +
2010-08-Y-3007 2010-08-Y-3007-0_T_F_1867867089 TOP [A/G] 27707263 CAAATCAAAGGGAATCTAATCTAATCAAAATGAATCACATCGAATTGAAT 37.1 Y 27197855 diploid Homo sapiens BGI 0 TOP ggaccagattagagtggaatggaatgcagtggagttgaatggaatgtaatgaagtggaatttagtggaatgaagtggaatggaatggaatggagtagagaggaatggaatggagtgtagtggaatggaagggattgtagtggattggagtggaacggaatggaattgagtggtagggactggaatggaatggaatggaatcaaatcaaagggaatctaatctaatcaaaatgaatcacatcgaattgaat[A/G]gaaaaaatggaattgaatggaatcgaaaggaatcaaatcgaatggaatagaatagcatagaatggaatcaaatggaatgaggtgaagtggagtggaggggaatggattggaatgaaatgggttggaaaggaatcgaacggactggagtggattgaactggagtggagtggaatgggacggagtggaaagtagtggagtggagtggattggtgtggaatgcagtggagtggagtggagcggaggggattgg ggaccagattagagtggaatggaatgcagtggagttgaatggaatgtaatgaagtggaatttagtggaatgaagtggaatggaatggaatggagtagagaggaatggaatggagtgtagtggaatggaagggattgtagtggattggagtggaacggaatggaattgagtggtagggactggaatggaatggaatggaatcaaatcaaagggaatctaatctaatcaaaatgaatcacatcgaattgaat[A/G]gaaaaaatggaattgaatggaatcgaaaggaatcaaatcgaatggaatagaatagcatagaatggaatcaaatggaatgaggtgaagtggagtggaggggaatggattggaatgaaatgggttggaaaggaatcgaacggactggagtggattgaactggagtggagtggaatgggacggagtggaaagtagtggagtggagtggattggtgtggaatgcagtggagtggagtggagcggaggggattgg 834 2 +
2010-08-Y-3008 2010-08-Y-3008-0_T_F_1867867091 TOP [A/G] 26648840 CAAAGGGAATCTAATCTAATCAAAATGAATCACATCGAATTGAATGGAAA 37.1 Y 27197860 diploid Homo sapiens BGI 0 TOP agattagagtggaatggaatgcagtggagttgaatggaatgtaatgaagtggaatttagtggaatgaagtggaatggaatggaatggagtagagaggaatggaatggagtgtagtggaatggaagggattgtagtggattggagtggaacggaatggaattgagtggtagggactggaatggaatggaatggaatcaaatcaaagggaatctaatctaatcaaaatgaatcacatcgaattgaatggaaa[A/G]aatggaattgaatggaatcgaaaggaatcaaatcgaatggaatagaatagcatagaatggaatcaaatggaatgaggtgaagtggagtggaggggaatggattggaatgaaatgggttggaaaggaatcgaacggactggagtggattgaactggagtggagtggaatgggacggagtggaaagtagtggagtggagtggattggtgtggaatgcagtggagtggagtggagcggaggggattggagtgg agattagagtggaatggaatgcagtggagttgaatggaatgtaatgaagtggaatttagtggaatgaagtggaatggaatggaatggagtagagaggaatggaatggagtgtagtggaatggaagggattgtagtggattggagtggaacggaatggaattgagtggtagggactggaatggaatggaatggaatcaaatcaaagggaatctaatctaatcaaaatgaatcacatcgaattgaatggaaa[A/G]aatggaattgaatggaatcgaaaggaatcaaatcgaatggaatagaatagcatagaatggaatcaaatggaatgaggtgaagtggagtggaggggaatggattggaatgaaatgggttggaaaggaatcgaacggactggagtggattgaactggagtggagtggaatgggacggagtggaaagtagtggagtggagtggattggtgtggaatgcagtggagtggagtggagcggaggggattggagtgg 834 2 +
401326 401326-0_B_F_1853042905 BOT [T/C] 83620432 TAGGCTGCATGAGGCAGGGGCGGGGTAAAGCTTGGCCAATGATATAAAAG 37.1 5 140027304 diploid Homo sapiens ILLUMINA 0 TOP TGTTTTTCCCTCCGACCAACCCCGAGCGCAAAGAAATTGACCTCGCAGCGGTCCTACAAT[A/G]CTTTTATATCATTGGCCAAGCTTTACCCCGCCCCTGCCTCATGCAGCCTATGGGCTAGGC TGTTTTTCCCTCCGACCAACCCCGAGCGCAAAGAAATTGACCTCGCAGCGGTCCTACAAT[A/G]CTTTTATATCATTGGCCAAGCTTTACCCCGCCCCTGCCTCATGCAGCCTATGGGCTAGGC 834 3 +
exm-rs10263935 exm-rs10263935-131_T_F_1990486919 TOP [A/G] 96728195 GAGCCCTTGATATACACATAAAATGGTTTTAGAGGACCTACAGAATAAGC 37.1 7 66096028 diploid Homo sapiens dbSNP 131 BOT CACTTCCGTGTGTGTATGCACTGTTACTCTTCTGCACCCACAGGACATGAAAATGCCTTG[T/C]GCTTATTCTGTAGGTCCTCTAAAACCATTTTATGTGTATATCAAGGGCTCAGATATCATT AATGATATCTGAGCCCTTGATATACACATAAAATGGTTTTAGAGGACCTACAGAATAAGC[A/G]CAAGGCATTTTCATGTCCTGTGGGTGCAGAAGAGTAACAGTGCATACACACACGGAAGTG 834 3 +
exm-rs12696304 exm-rs12696304-131_B_R_1990479211 BOT [G/C] 82686360 AGAACTTGTCTAGAGTCTTGAGGAAGTAGCTCAGCTTCAGTAAGCCTCAG 91601506 AGAACTTGTCTAGAGTCTTGAGGAAGTAGCTCAGCTTCAGTAAGCCTCAC 37.1 3 169481271 diploid Homo sapiens dbSNP 131 TOP agtgggactccgtctcaaaagaaagagaagaaaaaGCGATCTTAGATCACCTTGAGTAAA[C/G]TGAGGCTTACTGAAGCTGAGCTACTTCCTCAAGACTCTAGACAAGTTCTTGGCAAAATCA agtgggactccgtctcaaaagaaagagaagaaaaaGCGATCTTAGATCACCTTGAGTAAA[C/G]TGAGGCTTACTGAAGCTGAGCTACTTCCTCAAGACTCTAGACAAGTTCTTGGCAAAATCA 834 3 -
exm-rs13361189 exm-rs13361189-131_T_R_1990488512 TOP [A/G] 96774293 TCCCTTTCTAAACTGTACCCGCTGAGCACGGGGTCTACTAATATACATCC 37.1 5 150223387 diploid Homo sapiens dbSNP 131 BOT ATGGACAGTCAGTACCCTGCACTGGCCCGTGTCGTACCCAAGCAGAGTGTGCTTGAAAAT[T/C]GGATGTATATTAGTAGACCCCGTGCTCAGCGGGTACAGTTTAGAAAGGGAAGTTAACTTA TAAGTTAACTTCCCTTTCTAAACTGTACCCGCTGAGCACGGGGTCTACTAATATACATCC[A/G]ATTTTCAAGCACACTCTGCTTGGGTACGACACGGGCCAGTGCAGGGTACTGACTGTCCAT 834 3 -
exm-rs3798440 exm-rs3798440-131_B_R_1990482832 BOT [T/C] 40666864 TATTCTAGAGTCAGTATACTCTTTCAGAAATCTTATTCACATTGAGTGTG 37.1 6 76556619 diploid Homo sapiens dbSNP 131 BOT ATTGCCCTCTTATTCTAGAGTCAGTATACTCTTTCAGAAATCTTATTCACATTGAGTGTG[T/C]GTTTATATGTACAGTTAAATAATGGATTAATATGTTTAAATTACTTTTTATGTCTTCTTT AAAGAAGACATAAAAAGTAATTTAAACATATTAATCCATTATTTAACTGTACATATAAAC[A/G]CACACTCAATGTGAATAAGATTTCTGAAAGAGTATACTGACTCTAGAATAAGAGGGCAAT 834 3 +
exm-rs6603251 exm-rs6603251-131_T_R_1990493227 TOP [A/G] 90738922 CACATTCAGGTAAGTCCAGGTTCTGTCCCTGTCTGTGCTGTTTCTACCCC 37.1 XY 320580 diploid Homo sapiens dbSNP 131 BOT CATATTAAAAGCTAAAATAACAATAAGAGGATAAACCAAAGCTATGGAAACTATTACCTC[T/C]GGGGTAGAAACAGCACAGACAGGGACAGAACCTGGACTTACCTGAATGTGTCTAGTTTGT ACAAACTAGACACATTCAGGTAAGTCCAGGTTCTGTCCCTGTCTGTGCTGTTTCTACCCC[A/G]GAGGTAATAGTTTCCATAGCTTTGGTTTATCCTCTTATTGTTATTTTAGCTTTTAATATG 834 3 -
exm-rs7065696 exm-rs7065696-131_B_R_1990484747 BOT [G/C] 56638225 TTAGATTCAAGAGTGGGGCACAGATCTCACCTATCAGTAGGAAAGGTGTG 80779322 TTAGATTCAAGAGTGGGGCACAGATCTCACCTATCAGTAGGAAAGGTGTC 37.1 X 53974054 diploid Homo sapiens dbSNP 131 TOP TATATTGTTCTCTATAGTTTTGTATGTGTGGTGGTTTTAAAACATGACCCCAAATCCCAT[C/G]ACACCTTTCCTACTGATAGGTGAGATCTGTGCCCCACTCTTGAATCTAAGCAGGCTTATT TATATTGTTCTCTATAGTTTTGTATGTGTGGTGGTTTTAAAACATGACCCCAAATCCCAT[C/G]ACACCTTTCCTACTGATAGGTGAGATCTGTGCCCCACTCTTGAATCTAAGCAGGCTTATT 834 3 -
exm-rs770189 exm-rs770189-131_B_R_1990485226 BOT [G/C] 14783121 GACCAGTGCTGTCTCATAGAGCTTTCTGTGATGATCAATGCATTCTGTTG 88774410 GACCAGTGCTGTCTCATAGAGCTTTCTGTGATGATCAATGCATTCTGTTC 37.1 5 88088439 diploid Homo sapiens dbSNP 131 BOT ATTTCAGTCTAGACCAGTGCTGTCTCATAGAGCTTTCTGTGATGATCAATGCATTCTGTT[C/G]TATATCTTCCCTGTTTAATTCAGTAGCCACTAGCCACACATGACTACTGAATGCTTGAAA TTTCAAGCATTCAGTAGTCATGTGTGGCTAGTGGCTACTGAATTAAACAGGGAAGATATA[C/G]AACAGAATGCATTGATCATCACAGAAAGCTCTATGAGACAGCACTGGTCTAGACTGAAAT 839 3 +
exm1000025 exm1000025-0_T_F_1922480847 TOP [A/G] 19774232 CCTGGGCTTTGTGACAGCGGTGACAGAGAGAGTAGTTCTCAAACCACTCC 37.1 12 49446800 diploid Homo sapiens ExomeSNPs 0 TOP GTCTGACCTCCCTGGGCTTTGTGACAGCGGTGACAGAGAGAGTAGTTCTCAAACCACTCC[A/G]AGTTGGGATTCAGTTCTGCTGAGCCCGCCCCACAGGCCCGGCACACCCGGCACGCCTAAG GTCTGACCTCCCTGGGCTTTGTGACAGCGGTGACAGAGAGAGTAGTTCTCAAACCACTCC[A/G]AGTTGGGATTCAGTTCTGCTGAGCCCGCCCCACAGGCCCGGCACACCCGGCACGCCTAAG 834 3 +
exm1000100 exm1000100-0_T_R_1922585890 TOP [A/G] 11806523 ATTCACTCCACTACGAAGGCCGTGCTTTGGACATCACTACGTCTGACCGC 37.1 12 49485013 diploid Homo sapiens ExomeSNPs 0 BOT AGACCCAGTCGAAGCCGGCTTCCACTGCGAGGCGCGCCAGCAACCCATACTTGTTGCGGT[T/C]GCGGTCAGACGTAGTGATGTCCAAAGCACGGCCTTCGTAGTGGAGTGAATCCTGAGCGTG CACGCTCAGGATTCACTCCACTACGAAGGCCGTGCTTTGGACATCACTACGTCTGACCGC[A/G]ACCGCAACAAGTATGGGTTGCTGGCGCGCCTCGCAGTGGAAGCCGGCTTCGACTGGGTCT 834 3 -
exm1000105 exm1000105-0_B_F_1922580287 BOT [T/C] 6660991 GCCACATGTTCATCACGGCAATGGCCAAAGCGTTCACCCGCTCCTTACAA 37.1 12 49485171 diploid Homo sapiens ExomeSNPs 0 BOT CGCACTCCGGGCCACATGTTCATCACGGCAATGGCCAAAGCGTTCACCCGCTCCTTACAA[T/C]GCTGGCGGGGAATAAAGGAGTCAGTCTCCCCACCACCACCCTTGGGGCAAAAGGGACCTG CAGGTCCCTTTTGCCCCAAGGGTGGTGGTGGGGAGACTGACTCCTTTATTCCCCGCCAGC[A/G]TTGTAAGGAGCGGGTGAACGCTTTGGCCATTGCCGTGATGAACATGTGGCCCGGAGTGCG 834 3 +

Total number of rows: 851274

Table truncated, full table size 353317 Kbytes.




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Supplementary file Size Download File type/resource
GPL19718_CytoSNP-850K_B.csv.gz 86.2 Mb (ftp)(http) CSV

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