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Status
Public on Jan 01, 2015
Title
Medicago truncatula (Mt3.5) NimbleGen 12x135K
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Medicago truncatula Manufacturer
NimbleGen
Manufacture protocol
High-density DNA array prepared with Maskless Array Synthesizer (MAS) technology. See manufacturer's website at http://www.nimblegen.com/.
Description
NimbleGen design name NimbleChip_HX12, 120621_Mtruncatula_DVT_exp. A 1:2 expression design for 30,677 genes from Medicago truncatula annotated genome (Mt3.5) with four 60-mer probe pairs (PM/MM) per gene. The design includes random GC and other control probes.The Platform data table reflects a condensed representation of the expression array's replicate (SEQ_ID) features. The .ndf and .ngd files are linked below as supplementary files.
Submission date
Sep 11, 2014
Last update date
Jan 01, 2015
Contact name
Leonardo Casieri
E-mail(s)
[email protected] Organization name
INRA
Department
UMR1347
Lab
IPM
Street address
17, rue Sully
City
Dijon
ZIP/Postal code
21057
Country
France
Samples (42)
GSM1502798 , GSM1502799 , GSM1502800 , GSM1502801 , GSM1502802 , GSM1502803
GSM1502804 ,
GSM1502805 ,
GSM1502806 ,
GSM1502807 ,
GSM1502808 ,
GSM1502809 ,
GSM1502810 ,
GSM1502811 ,
GSM1502812 ,
GSM1502813 ,
GSM1502814 ,
GSM1502815 ,
GSM1502816 ,
GSM1502817 ,
GSM1502818 ,
GSM1502819 ,
GSM1502820 ,
GSM1502821 ,
GSM1502822 ,
GSM1502823 ,
GSM1502824 ,
GSM1502825 ,
GSM1502826 ,
GSM1502827 ,
GSM1502828 ,
GSM1502829 ,
GSM1502830 ,
GSM1502831 ,
GSM1502832 ,
GSM1502833 ,
GSM1502834 ,
GSM1502835 ,
GSM1502836 ,
GSM1502837 ,
GSM1502838 ,
GSM1502839 Series (1)
GSE61357 Transcriptional responses of Medicago truncatula upon sulfur deficiency stress and arbuscular mycorrhizal symbiosis
Data table header descriptions ID SPOT_ID GENE ID
GENOME_ACC
Data table ID SPOT_ID GENOME_ACC IMGA_AC130806_11_1
AC130806.11.1
GCA_000219495.1
IMGA_AC130806_12_1
AC130806.12.1
GCA_000219495.1
IMGA_AC130806_15_1
AC130806.15.1
GCA_000219495.1
IMGA_AC130806_26_1
AC130806.26.1
GCA_000219495.1
IMGA_AC130806_28_1
AC130806.28.1
GCA_000219495.1
IMGA_AC130806_5_1
AC130806.5.1
GCA_000219495.1
IMGA_AC130806_6_1
AC130806.6.1
GCA_000219495.1
IMGA_AC137826_10_1
AC137826.10.1
GCA_000219495.1
IMGA_AC137826_15_1
AC137826.15.1
GCA_000219495.1
IMGA_AC137826_16_1
AC137826.16.1
GCA_000219495.1
IMGA_AC137826_1_1
AC137826.1.1
GCA_000219495.1
IMGA_AC137826_20_1
AC137826.20.1
GCA_000219495.1
IMGA_AC137826_29_1
AC137826.29.1
GCA_000219495.1
IMGA_AC137826_32_1
AC137826.32.1
GCA_000219495.1
IMGA_AC137826_34_1
AC137826.34.1
GCA_000219495.1
IMGA_AC137826_36_1
AC137826.36.1
GCA_000219495.1
IMGA_AC137826_5_1
AC137826.5.1
GCA_000219495.1
IMGA_AC137826_7_1
AC137826.7.1
GCA_000219495.1
IMGA_AC139744_10_1
AC139744.10.1
GCA_000219495.1
IMGA_AC139744_11_1
AC139744.11.1
GCA_000219495.1
30677 1579 Kbytes .Supplementary file Size Download File type/resource GPL19188_120621_Mtruncatula_DVT_exp.ndf.gz
8.4 Mb
(ftp) (http) NDF
GPL19188_120621_Mtruncatula_DVT_exp.ngd.gz
1.1 Mb
(ftp) (http) NGD
GPL19188_120621_Mtruncatula_DVT_exp_OID39232_Mtrun_rank4_probes.txt.gz
4.4 Mb
(ftp) (http) TXT
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