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Platform GPL18933 Query DataSets for GPL18933
Status Public on Oct 01, 2014
Title Streptococcus mutans UA159 Agilent single-channel 15K genechip
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Streptococcus mutans UA159
Manufacturer Agilent
Manufacture protocol See manufacturer's website at http://www.agilent.com/
 
Description The custom-commercial Agilent microarray covers 1998 S.mutans genes, and each genes are replicated by using 7 probes. This desigh also includes control probes.
 
Submission date Jul 10, 2014
Last update date Oct 01, 2014
Contact name Yulong Niu
E-mail(s) [email protected]
Organization name Max Planck Institute for Plant Breeding Research
Department Plant Microbe Interactions
Street address Carl-von-Linne-Weg 10
City Köln
State/province Nordrhein-Westfalen
ZIP/Postal code 50829
Country Germany
 
Samples (29) GSM1433099, GSM1433100, GSM1433101, GSM1433102, GSM1433103, GSM1433104 
Series (2)
GSE59302 A time-series transcriptomic changes of Streptococcus mutans in response to heat stress
GSE65511 The CdaA Regulon in Streptoccus mutans

Data table header descriptions
ID
GeneSymbol gene symbols
RANGE_START start position of ORF in genome
RANGE_END end position of ORF in genome
RANGE_STRAND genome strand
TargetID gene ID corresponding to the S.mutans genome in NCBI genome database
ORF
SEQUENCE probe sequence

Data table
ID GeneSymbol RANGE_START RANGE_END RANGE_STRAND TargetID ORF SEQUENCE
1 dnaA 194 1552 + lcl|NC_004350.2_gene_1 SMU_01 GCGAGATCATTCAACCGTTCTACATGCCTATAATAAAATCAAAAATATGTTAGCACAGGA
2 - 9632 10846 + lcl|NC_004350.2_gene_10 SMU_12 GGAGATGCTTACGATTATAAGCATGATGTTGCTATTATTTATGCTGACCAACCTTTTATC
3 - 91445 92008 + lcl|NC_004350.2_gene_100 SMU_87 CCTAAGTTAATCGGCGGCAGCCGTGCTAGCTATCAGCCAGATCCTATTCGTAAATTTTAA
4 - 998418 998765 + lcl|NC_004350.2_gene_1000 SMU_1052 GGAGGGTTTCCCATTAAAAATCACCATTAATAAAGACTTAACAGCCTTTAAACTGACCAT
5 - 999061 999702 + lcl|NC_004350.2_gene_1001 SMU_1053 TTGCCAAAGGGAGTTGTTGCTCAATATGTCGATTTAACTAGCGAATTACAAACTCTATTG
6 - 999726 1000421 + lcl|NC_004350.2_gene_1002 SMU_1054 GCTGCTTGAATCACGAAAAGAGGATCGAGAACTTTTCAATTATGTTGTTAGAGAACTTTA
7 radC 1000418 1001047 - lcl|NC_004350.2_gene_1003 SMU_1055 CGAGAATGACCTGCGATTTACAGAAAAAATAAAACGATCCTGTGATGATTTAGGAATCGT
8 - 1001046 1001165 + lcl|NC_004350.2_gene_1004 SMU_1056 GTGCTTCTTTTGCAGAATGGATTGAATACATAAGATACCTCCACTATATTATTCGTGTTC
9 satE 1001196 1001933 - lcl|NC_004350.2_gene_1005 SMU_1057 TTCGCTTCCATTGGTTTAGTGTTTACAGCGAAATCTATTGCTCGTTATGATAAAATTGCT
10 satD 1001930 1002598 - lcl|NC_004350.2_gene_1006 SMU_1058 CCTCAGAAATAAAAAGGTAGCTACGACCTTACTGTTAAATGCCATTAGGAAGGAGAAGAG
11 satC 1002695 1003222 - lcl|NC_004350.2_gene_1007 SMU_1059 GTAGCAAGAGTAGCATTTGTCACATCCATCATTGTCATTATCGTAACTATAATCTATGCT
12 ffh 1003242 1004792 - lcl|NC_004350.2_gene_1008 SMU_1060 CTTAAAGGTAAGGTCGGCGAATTTGCTATGAAACAATCTATGAAGAAAATGGCTAAAAGA
13 ylxM 1004905 1005237 - lcl|NC_004350.2_gene_1009 SMU_1061 CCTAATGATCCTTATCTGCAGAACAAGATTTCCATATTGACGACTATTGATAATAGAGAC
14 - 92179 93036 - lcl|NC_004350.2_gene_101 SMU_88c TTGCTGGCAAATCATATTTCCCTGCCAACAGCTAATGCCATCCCTATTGCTAAAAAATAA
15 opuAb 1005347 1007077 - lcl|NC_004350.2_gene_1010 SMU_1062 CCAGAAAAAGCAGCTAAAAAATGGATTAAAGAACATCCTAAGAAGGTTGCATCTTGGACA
16 opuAa 1007080 1008294 - lcl|NC_004350.2_gene_1011 SMU_1063 TTGAAGCTCTCGCTAATACAAAGGATGATACAGATACAGAAGCAGAAGGAGAGGAAGAAT
17 - 1008567 1009199 - lcl|NC_004350.2_gene_1012 SMU_1064c GTCAGAAAAGGAGATATCCTTTACTTTGTTGGAGATGACTTTGCTTTTTCACGGATGAAA
18 - 1009203 1009901 - lcl|NC_004350.2_gene_1013 SMU_1065c TTTGAATATGTCCGCAGCCAATATGTCGGTGAGCGTTTTGAGTTTTATTTAGAAAATAAG
19 guaA 1010105 1011658 + lcl|NC_004350.2_gene_1014 SMU_1066 AGATCTCTGTTCGTATTGTCAACGAAGTGGAACACGTCAACCGCATCGTCTACGACATTA
20 - 1011784 1012572 - lcl|NC_004350.2_gene_1015 SMU_1067c GCCAGCAGCTATCCATATAATAATCGCTTGTCTTGTTATTATATGCTCTTTTATCATCTC

Total number of rows: 1998

Table truncated, full table size 233 Kbytes.




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Supplementary file Size Download File type/resource
GPL18933_MOST_cluster.txt.gz 9.4 Kb (ftp)(http) TXT
GPL18933_MOST_fate.txt.gz 10.4 Kb (ftp)(http) TXT
GPL18933_MOST_sum.txt.gz 218 b (ftp)(http) TXT
GPL18933_MOST_tdt.txt.gz 70.5 Kb (ftp)(http) TXT

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