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Status
Public on Jan 21, 2014
Title
Agilent-036667 Sinorhizobium meliloti Smexpr1
Technology type
in situ oligonucleotide
Distribution
custom-commercial
Organism
Sinorhizobium meliloti
Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
S. meliloti expression array Arrays of this design have barcodes that begin with 16036667 or 2536667. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
Submission date
Jan 16, 2014
Last update date
Jan 21, 2014
Contact name
Nicole Janell De Nisco
E-mail(s)
[email protected]
Organization name
University of Texas Southwestern Medical Center
Department
Molecular Biology
Lab
Orth
Street address
6000 Harry Hines Blvd, NA5.146, NA5.146
City
Dallas
State/province
Texas
ZIP/Postal code
75390-9148
Country
USA
Samples (86)
GSM1310182 , GSM1310183 , GSM1310184 , GSM1310185 , GSM1310186 , GSM1310187
GSM1310188 ,
GSM1310189 ,
GSM1310190 ,
GSM1310191 ,
GSM1310192 ,
GSM1310193 ,
GSM1310194 ,
GSM1310195 ,
GSM1310196 ,
GSM1310197 ,
GSM1310198 ,
GSM1310199 ,
GSM1310200 ,
GSM1310201 ,
GSM1310202 ,
GSM1310203 ,
GSM1310204 ,
GSM1310205 ,
GSM1310206 ,
GSM1310207 ,
GSM1310208 ,
GSM1310209 ,
GSM1310210 ,
GSM1310211 ,
GSM1310212 ,
GSM1310864 ,
GSM1310865 ,
GSM1310866 ,
GSM1310867 ,
GSM1310868 ,
GSM1310869 ,
GSM1310870 ,
GSM1310871 ,
GSM1310872 ,
GSM1310873 ,
GSM1310874 ,
GSM1310875 ,
GSM1310876 ,
GSM1310877 ,
GSM1310878 ,
GSM1310879 ,
GSM1310880 ,
GSM1310881 ,
GSM1310882 ,
GSM1310883 ,
GSM1310884 ,
GSM1310885 ,
GSM1310886 ,
GSM1310887 ,
GSM1310888 ,
GSM1310889 ,
GSM1310890 ,
GSM1310891 ,
GSM1310892 ,
GSM1310893 ,
GSM1310894 ,
GSM1665922 ,
GSM1665923 ,
GSM1665924 ,
GSM1665925 ,
GSM1665926 ,
GSM1665927 ,
GSM1665928 ,
GSM1665929 ,
GSM1665930 ,
GSM1665931 ,
GSM1665932 ,
GSM1665933 ,
GSM1665934 ,
GSM1665935 ,
GSM1665936 ,
GSM1665937 ,
GSM1665938 ,
GSM1665939 ,
GSM1665940 ,
GSM1665941 ,
GSM1665942 ,
GSM1665943 ,
GSM1665944 ,
GSM1665945
Series (3)
GSE54208
Global analysis of cell cycle gene expression of the legume symbiont Sinorhizobium meliloti
GSE54244
Host plant peptides elicit a transcriptional response to control the Sinorhizobium meliloti cell cycle during symbiosis
GSE68218
The transcirptional effect of CtrA depletion in S. meliloti
Data table header descriptions
ID
Agilent feature number
SPOT_ID
Spot identifier
CONTROL_TYPE
Control type
ORF
CHROMOSOMAL_LOCATION
Chromosomal Location
SEQUENCE
Sequence
Data table
ID
SPOT_ID
CONTROL_TYPE
ORF
CHROMOSOMAL_LOCATION
SEQUENCE
(+)E1A_r60_1
(+)E1A_r60_1
pos
(+)E1A_r60_3
(+)E1A_r60_3
pos
(+)E1A_r60_a104
(+)E1A_r60_a104
pos
(+)E1A_r60_a107
(+)E1A_r60_a107
pos
(+)E1A_r60_a135
(+)E1A_r60_a135
pos
(+)E1A_r60_a20
(+)E1A_r60_a20
pos
(+)E1A_r60_a22
(+)E1A_r60_a22
pos
(+)E1A_r60_a97
(+)E1A_r60_a97
pos
(+)E1A_r60_n11
(+)E1A_r60_n11
pos
(+)E1A_r60_n9
(+)E1A_r60_n9
pos
(+)eQC-39
(+)eQC-39
pos
(+)eQC-40
(+)eQC-40
pos
(+)eQC-41
(+)eQC-41
pos
(+)eQC-42
(+)eQC-42
pos
(-)3xSLv1
(-)3xSLv1
neg
CUST_1000_PI427011356
CUST_1000_PI427011356
FALSE
SMa1823
unmapped
CTTGACGATCCTAGCGACGCCAATCCTCTGTTTCTGGAGCAGATCAATCTCGCCATGTTG
CUST_1001_PI427011356
CUST_1001_PI427011356
FALSE
SMa1825
unmapped
CGATTCAGCATACTTTCTGATGCTGTACCTCAAGGATGCGTATCATTGCGACGTTGCTCC
CUST_1002_PI427011356
CUST_1002_PI427011356
FALSE
SMa1828
unmapped
TATCTCGCCATTTTCGGAACACCTGAGACGCCCGATGATCTCAGTCGACATGGCTGTATC
CUST_1003_PI427011356
CUST_1003_PI427011356
FALSE
SMa1831
unmapped
ATTTACGGGCTCGGCTATTCGAACGGGGCAAACATCCTTGCGTCCGTTTTGTTCAAGAAT
CUST_1004_PI427011356
CUST_1004_PI427011356
FALSE
SMa1832
unmapped
GTTCCCTTTCTGTGGCTAAAGGATCGCATAACGAAGCGATTGGAGCCCACCAGCTCTATG
Total number of rows: 6203 Table truncated, full table size 771 Kbytes .
Supplementary file
Size
Download
File type/resource
GPL18182_036667_D_GEO_20110920.txt.gz
450.6 Kb
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