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Platform GPL18182 Query DataSets for GPL18182
Status Public on Jan 21, 2014
Title Agilent-036667 Sinorhizobium meliloti Smexpr1
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Sinorhizobium meliloti
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description S. meliloti expression array

Arrays of this design have barcodes that begin with 16036667 or 2536667.

Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.

The ID column represents the Agilent Feature Extraction feature number.

Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).

To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.

 
Submission date Jan 16, 2014
Last update date Jan 21, 2014
Contact name Nicole Janell De Nisco
E-mail(s) [email protected]
Organization name University of Texas Southwestern Medical Center
Department Molecular Biology
Lab Orth
Street address 6000 Harry Hines Blvd, NA5.146, NA5.146
City Dallas
State/province Texas
ZIP/Postal code 75390-9148
Country USA
 
Samples (86) GSM1310182, GSM1310183, GSM1310184, GSM1310185, GSM1310186, GSM1310187 
Series (3)
GSE54208 Global analysis of cell cycle gene expression of the legume symbiont Sinorhizobium meliloti
GSE54244 Host plant peptides elicit a transcriptional response to control the Sinorhizobium meliloti cell cycle during symbiosis
GSE68218 The transcirptional effect of CtrA depletion in S. meliloti

Data table header descriptions
ID Agilent feature number
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ORF
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID SPOT_ID CONTROL_TYPE ORF CHROMOSOMAL_LOCATION SEQUENCE
(+)E1A_r60_1 (+)E1A_r60_1 pos
(+)E1A_r60_3 (+)E1A_r60_3 pos
(+)E1A_r60_a104 (+)E1A_r60_a104 pos
(+)E1A_r60_a107 (+)E1A_r60_a107 pos
(+)E1A_r60_a135 (+)E1A_r60_a135 pos
(+)E1A_r60_a20 (+)E1A_r60_a20 pos
(+)E1A_r60_a22 (+)E1A_r60_a22 pos
(+)E1A_r60_a97 (+)E1A_r60_a97 pos
(+)E1A_r60_n11 (+)E1A_r60_n11 pos
(+)E1A_r60_n9 (+)E1A_r60_n9 pos
(+)eQC-39 (+)eQC-39 pos
(+)eQC-40 (+)eQC-40 pos
(+)eQC-41 (+)eQC-41 pos
(+)eQC-42 (+)eQC-42 pos
(-)3xSLv1 (-)3xSLv1 neg
CUST_1000_PI427011356 CUST_1000_PI427011356 FALSE SMa1823 unmapped CTTGACGATCCTAGCGACGCCAATCCTCTGTTTCTGGAGCAGATCAATCTCGCCATGTTG
CUST_1001_PI427011356 CUST_1001_PI427011356 FALSE SMa1825 unmapped CGATTCAGCATACTTTCTGATGCTGTACCTCAAGGATGCGTATCATTGCGACGTTGCTCC
CUST_1002_PI427011356 CUST_1002_PI427011356 FALSE SMa1828 unmapped TATCTCGCCATTTTCGGAACACCTGAGACGCCCGATGATCTCAGTCGACATGGCTGTATC
CUST_1003_PI427011356 CUST_1003_PI427011356 FALSE SMa1831 unmapped ATTTACGGGCTCGGCTATTCGAACGGGGCAAACATCCTTGCGTCCGTTTTGTTCAAGAAT
CUST_1004_PI427011356 CUST_1004_PI427011356 FALSE SMa1832 unmapped GTTCCCTTTCTGTGGCTAAAGGATCGCATAACGAAGCGATTGGAGCCCACCAGCTCTATG

Total number of rows: 6203

Table truncated, full table size 771 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL18182_036667_D_GEO_20110920.txt.gz 450.6 Kb (ftp)(http) TXT

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