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Platform GPL18053

Query DataSets for GPL18053

Status

Public on Dec 13, 2013

Title

NimbleGen Human CGH array [091130_HG18_DL_CGH; condensed PROBE_ID version]

Technology type

in situ oligonucleotide

Distribution

custom-commercial

Organism

Homo sapiens

Manufacturer

Roche NimbleGen

Manufacture protocol

see manufacturer's web site www.nimblegen.com

Description

Build: Hg18, NCBI 36
HX1 HG18 whole genome CGH design, using empirically optimized probes distributed across the genome.

Design ID: 11006
091130_HG18_DL_CGH.ndf
091130_HG18_DL_CGH.pos

Please note that there are 1,867 duplicated PROBE_IDs (with different SEQ_ID) in the .pos design file. This platform represents the condensed PROBE_ID view.

Submission date

Dec 12, 2013

Last update date

Dec 13, 2013

Contact name

Matt Walter

E-mail(s)

[email protected]

Organization name

washington university in st.louis school of medicine

Department

oncology

Street address

4940 parkview

City

st.louis

ZIP/Postal code

63110

Country

USA

Samples (30)

More...

GSM1288585, GSM1288588, GSM1288591, GSM1288594, GSM1288597, GSM1288598

Series (2)

GSE53250	The DNA Double-Strand Break Response Is Abnormal in Myeloblasts From Patients With Therapy-Related Acute Myeloid Leukemia [NimbleGen]
GSE53251	The DNA Double-Strand Break Response Is Abnormal in Myeloblasts From Patients With Therapy-Related Acute Myeloid Leukemia

Data table header descriptions
ID	PROBE_ID
CHROMOSOME
RANGE_START	CHR_POSITION
SPOT_ID	PROBE_ID from .pos file

Data table
ID	CHROMOSOME	RANGE_START	SPOT_ID
CHR01FS000037196	chr1	37196	CHR01FS000037196
CHR01FS000049283	chr1	49283	CHR01FS000049283
CHR01FS000052308	chr1	52308	CHR01FS000052308
CHR01FS000241735	chr1	241735	CHR01FS000241735
CHR01FS000357503	chr1	357503	CHR01FS000357503
CHR01FS000443361	chr1	443361	CHR01FS000443361
CHR01FS000530358	chr1	530358	CHR01FS000530358
CHR01FS000547649	chr1	547649	CHR01FS000547649
CHR01FS000554269	chr1	554269	CHR01FS000554269
CHR01FS000554297	chr1	554297	CHR01FS000554297
CHR01FS000554689	chr1	554689	CHR01FS000554689
CHR01FS000554715	chr1	554715	CHR01FS000554715
CHR01FS000555287	chr1	555287	CHR01FS000555287
CHR01FS000555333	chr1	555333	CHR01FS000555333
CHR01FS000555365	chr1	555365	CHR01FS000555365
CHR01FS000555723	chr1	555723	CHR01FS000555723
CHR01FS000555759	chr1	555759	CHR01FS000555759
CHR01FS000555849	chr1	555849	CHR01FS000555849
CHR01FS000556617	chr1	556617	CHR01FS000556617
CHR01FS000556641	chr1	556641	CHR01FS000556641

Total number of rows: 718385

Table truncated, full table size 34069 Kbytes.

Download family	Format
SOFT formatted family file(s)	SOFT
MINiML formatted family file(s)	MINiML

Supplementary file	Size	Download	File type/resource
GPL18053_091130_HG18_DL_CGH.ndf.gz	46.9 Mb	(ftp)(http)	NDF
GPL18053_091130_HG18_DL_CGH.pos.gz	5.8 Mb	(ftp)(http)	POS