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Status
Public on Jun 27, 2002
Title
SVC
Technology type
spotted DNA/cDNA
Distribution
non-commercial
Organism
Homo sapiens
Description
A microarray with 9216 spot features.
Submission date
May 22, 2002
Last update date
May 26, 2005
Organization
Stanford Microarray Database (SMD)
E-mail(s)
[email protected] Phone
650-498-6012
URL
http://genome-www5.stanford.edu/ Department
Stanford University, School of Medicine
Street address
300 Pasteur Drive
City
Stanford
State/province
CA
ZIP/Postal code
94305
Country
USA
Samples (100)
GSM1844 , GSM1845 , GSM1846 , GSM1847 , GSM1848 , GSM1849
GSM1850 ,
GSM1851 ,
GSM1852 ,
GSM1853 ,
GSM1854 ,
GSM1855 ,
GSM1856 ,
GSM1857 ,
GSM1858 ,
GSM1859 ,
GSM1860 ,
GSM1861 ,
GSM1862 ,
GSM1863 ,
GSM1864 ,
GSM1865 ,
GSM1866 ,
GSM1867 ,
GSM1868 ,
GSM1869 ,
GSM1870 ,
GSM1871 ,
GSM1872 ,
GSM1873 ,
GSM1874 ,
GSM1875 ,
GSM1876 ,
GSM1877 ,
GSM1878 ,
GSM1879 ,
GSM1880 ,
GSM1881 ,
GSM1882 ,
GSM1883 ,
GSM1884 ,
GSM1885 ,
GSM1886 ,
GSM1887 ,
GSM1888 ,
GSM1889 ,
GSM1890 ,
GSM1891 ,
GSM1892 ,
GSM1893 ,
GSM1894 ,
GSM1895 ,
GSM1896 ,
GSM1897 ,
GSM1898 ,
GSM1899 ,
GSM1900 ,
GSM1901 ,
GSM1902 ,
GSM1903 ,
GSM1904 ,
GSM1905 ,
GSM1906 ,
GSM1907 ,
GSM1908 ,
GSM1909 ,
GSM1910 ,
GSM1911 ,
GSM1912 ,
GSM1913 ,
GSM1914 ,
GSM1915 ,
GSM1916 ,
GSM1917 ,
GSM1918 ,
GSM1919 ,
GSM1920 ,
GSM1921 ,
GSM1922 ,
GSM1923 ,
GSM1924 ,
GSM1925 ,
GSM1926 ,
GSM1927 ,
GSM73720 ,
GSM75807 ,
GSM75810 ,
GSM75811 ,
GSM75813 ,
GSM75814 ,
GSM75816 ,
GSM75820 ,
GSM75821 ,
GSM75822 ,
GSM75823 ,
GSM75824 ,
GSM75825 ,
GSM75827 ,
GSM75828 ,
GSM98953 Series (8)
GSE61 Molecular portraits of human breast tumors
GSE3193 Breast Tumor Clinical Implications
GSE3281 Breast Cancer aCGH
GSE3353 A comparison of gene expression signatures from breast tumors and breast tissue derived cell lines
GSE4268 Breast and ovarian carcinoma
GSE4335 Norway/Stanford Breast Tumors
GSE4336 Breast tumors
GSE4382 Repeated observation of breast tumor subtypes in independent gene expression data sets
Data table header descriptions ID unique spot identifier
NAME name of spot
CLONE_ID cDNA clone identifier
GENE_SYM gene symbol
GENE_NAME gene name, description
UNIGENE NCBI UniGene cluster identifier
GB_ACC GenBank accession number
SPOT_ID PREFERRED_NAME preferred gene name
SECTOR spot sector grid coordinate
SECTORROW spot row grid coordinate
SECTORCOL spot column grid coordinate
SOURCE PLATE clone plate identifier
PROW clone plate row
PCOL clone plate column
FAILED IS_VERIFIED IS_CONTAMINATED
Data table ID NAME CLONE_ID GENE_SYM GENE_NAME UNIGENE GB_ACC SPOT_ID PREFERRED_NAME SECTOR SECTORROW SECTORCOL SOURCE PLATE PROW PCOL FAILED IS_VERIFIED IS_CONTAMINATED 1
13762
IMAGE:753234
ZFX
zinc finger protein, X-linked
2074
AA406372 1
1
1
GF200:96(1A1):384(1A1)
1
A
1
0
Y
U
2
13766
IMAGE:50794
ZNF133
zinc finger protein 133 (clone pHZ-13)
78434
H17047 1
1
2
GF200:96(1A3):384(1A5)
1
A
5
0
Y
U
3
13770
IMAGE:302190
MLL
myeloid/lymphoid or mixed-lineage leukemia (trithorax (Drosophila) homolog)
199160
N77807 1
1
3
GF200:96(1A5):384(1A9)
1
A
9
0
Y
U
4
13774
IMAGE:51408
DSCR1L1
Down syndrome critical region gene 1-like 1
156007
H19439 1
1
4
GF200:96(1A7):384(1A13)
1
A
13
0
Y
U
5
13778
IMAGE:324901
WNT5A
wingless-type MMTV integration site family, member 5A
152213
W49672 1
1
5
GF200:96(1A9):384(1A17)
1
A
17
0
Y
U
6
13782
IMAGE:234856
VHL
von Hippel-Lindau syndrome
174007
H73053 1
1
6
GF200:96(1A11):384(1A21)
1
A
21
0
Y
U
7
13858
IMAGE:628529
UCP3
uncoupling protein 3 (mitochondrial, proton carrier)
101337
AA192136 1
1
7
GF200:96(1C1):384(1E1)
1
E
1
0
Y
U
8
13862
IMAGE:49464
UNG
uracil-DNA glycosylase
78853
H15111 1
1
8
GF200:96(1C3):384(1E5)
1
E
5
0
Y
U
9
13866
IMAGE:78294
UGT2B15
**UDP glycosyltransferase 2 family, polypeptide B15
150207
T50788 1
1
9
GF200:96(1C5):384(1E9)
1
E
9
0
Y
U
10
13870
IMAGE:51328
CDC34
cell division cycle 34
76932
H20742 1
1
10
GF200:96(1C7):384(1E13)
1
E
13
0
Y
U
11
13874
IMAGE:25499
Homo sapiens mRNA; cDNA DKFZp564A176 (from clone DKFZp564A176); complete cds
322844
R11698 1
1
11
GF200:96(1C9):384(1E17)
1
E
17
0
Y
U
12
13878
IMAGE:141818
SNRPA
small nuclear ribonucleoprotein polypeptide A
173255
R70488 1
1
12
GF200:96(1C11):384(1E21)
1
E
21
0
Y
U
13
13953
IMAGE:366893
TCF3
transcription factor 3 (E2A immunoglobulin enhancer binding factors E12/E47)
101047
AA026102 1
1
13
GF200:96(1E1):384(1I1)
1
I
1
0
Y
U
14
13957
IMAGE:823864
TCN2
transcobalamin II; macrocytic anemia
84232
AA490459 1
1
14
GF200:96(1E3):384(1I5)
1
I
5
0
Y
U
15
13961
IMAGE:240766
TIMP1
tissue inhibitor of metalloproteinase 1 (erythroid potentiating activity, collagenase inhibitor)
5831
H80214 1
1
15
GF200:96(1E5):384(1I9)
1
I
9
0
Y
U
16
13965
IMAGE:66721
SERPINA7
serine (or cysteine) proteinase inhibitor, clade A (alpha-1 antiproteinase, antitrypsin), member 7
76838
T64901 1
1
16
GF200:96(1E7):384(1I13)
1
I
13
0
Y
U
17
13969
IMAGE:205185
THBD
thrombomodulin
2030
H59861 1
1
17
GF200:96(1E9):384(1I17)
1
I
17
0
Y
U
18
13973
IMAGE:241530
EPHA2
EphA2
171596
H84480 1
1
18
GF200:96(1E11):384(1I21)
1
I
21
0
Y
U
19
14049
IMAGE:771220
RELA
v-rel avian reticuloendotheliosis viral oncogene homolog A (nuclear factor of kappa light polypeptide gene enhancer in B-cells 3 (p65))
75569
AA443546 NFkB-p65
1
1
19
GF200:96(1G1):384(1M1)
1
M
1
0
Y
U
20
14053
IMAGE:592243
TCN1
transcobalamin I (vitamin B12 binding protein, R binder family)
2012
AA155640 1
1
20
GF200:96(1G3):384(1M5)
1
M
5
0
Y
U
9216 1183 Kbytes .Supplementary data files not provided
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