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Platform GPL17101 Query DataSets for GPL17101
Status Public on Jan 15, 2014
Title Agilent-025954 Streptomyces avermitilis Matriz_JFA_V1
Technology type in situ oligonucleotide
Distribution commercial
Organism Streptomyces avermitilis
Manufacturer Agilent Technologies
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description S.avermitilis and polienos
Arrays of this design have barcodes that begin with 16025954 or 2525954.
Orientation:
Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software.
The ID column represents the Agilent Feature Extraction feature number.
Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface).
To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Submission date May 01, 2013
Last update date Jan 15, 2014
Contact name Tiago Beites
E-mail(s) [email protected]
Organization name IBMC
Street address rua do campo alegre, 823
City Porto
ZIP/Postal code 4150-180
Country Portugal
 
Samples (30) GSM1131872, GSM1131873, GSM1131874, GSM1131875, GSM1131876, GSM1131877 
Series (2)
GSE46537 ROS homeostasis and pimaricin production in Streptomyces natalensis ATCC 27448
GSE185887 Modulation of multiple gene clusters expression by a single PAS-LuxR transcriptional regulator

Data table header descriptions
ID Agilent feature number
COL Column
ROW Row
NAME NAME
SPOT_ID Spot identifier
CONTROL_TYPE Control type
ORF
ACCESSION_STRING Accession String
CHROMOSOMAL_LOCATION Chromosomal Location
SEQUENCE Sequence

Data table
ID COL ROW NAME SPOT_ID CONTROL_TYPE ORF ACCESSION_STRING CHROMOSOMAL_LOCATION SEQUENCE
1 96 164 GE_BrightCorner GE_BrightCorner pos
2 96 162 DarkCorner DarkCorner pos
3 96 160 DarkCorner DarkCorner pos
4 96 158 Tpim_15751_R Tpim_15751_R FALSE unmapped GGAGAGCGGCACCCAGGTCCAGGTGCTGGTCGGACCCGCCGACGAGGCAGGCACCCGCAC
5 96 156 Tpim_53881_R Tpim_53881_R FALSE unmapped CCTGCTGCTGGCGGCCAGCTGGTAGTCGGGCCGGACACCACGGATACCCCGGCGCGCCAT
6 96 154 Tpim_16621_R Tpim_16621_R FALSE unmapped CGGGGTGTCGATCGCGGCGGTCAACGGCCCGGAGGCGGTGGTGATCGCAGGGGAGGAGCG
7 96 152 Tpim_76801_R_m Tpim_76801_R_m FALSE unmapped TCCGGCGCGGCGGTCGCCTGGGTGGAGTCCCTGGTGATAGGTCCGCTCTGGGCCGGGCAG
8 96 150 CUST_3941_PI420321283 CUST_3941_PI420321283 FALSE SAV_3998 SAV3998 unmapped CAGACCCTCTCGTTTCCTTCCTCATCGGCTTGGGTGCGCTGTCGGGTGTCGAAAAGGTGG
9 96 148 CUST_4512_PI420321283 CUST_4512_PI420321283 FALSE SAV_4569 SAV4569 unmapped CTGTTGTTCGGCCTTACCTGCTATCTCTCGTACGGGCTCACGCTGTTCGCGGTGATCGCG
10 96 146 Tpim_19291_R Tpim_19291_R FALSE unmapped AGGGCGCCCGCCGCACGGCCGTGAACACGACGGGAGAGACGGCCGTGTCCCTCGCCGACC
11 96 144 Tpim_17371_R_m Tpim_17371_R_m FALSE unmapped GTGGCGGGCGGGCGTGTCGACCTTCGCCAACAGCGGCACGAACGCCCACTTCATCCTTGA
12 96 142 CUST_7357_PI420321283 CUST_7357_PI420321283 FALSE SAV_7417 SAV7417 unmapped GAGTTCCTGTCCGAACAGGGCATCAAGGACCTGTTGCTGAACGCGACCATCCTGGTGCTG
13 96 140 Tpim_24361_R Tpim_24361_R FALSE unmapped CTCGCCTCCGTCTCCGTGGCCCAGCTGCGCGAGATCGGCGTGCTCGAACCCCTGCTGAAG
14 96 138 Tpim_28681_R_m Tpim_28681_R_m FALSE unmapped GAGGCCCTGCAGCGCACCGCCATCGACCCGGCCCGGCTGGGCGGCGGCGTCACCGGCGTG
15 96 136 Tpim_87091_R_m Tpim_87091_R_m FALSE unmapped TGGCTCGTCCTCCTGCCCGTAGGCGGCACGGACGACCCGAGGACCGCCCCCCTCCTGGAC
16 96 134 Tpim_43501_R_m Tpim_43501_R_m FALSE unmapped GCCGACGCCCCACAGGCGAAGGCCGCCAACCTGCTCGGCCCGGCCCACCACGACAGCCTC
17 96 132 CUST_5965_PI420321283 CUST_5965_PI420321283 FALSE SAV_6024 SAV6024 unmapped CATCAAGTTCAACCTGGGCACCTTCTTCTCGAAGGCCGAGTACACCCAGAACGGTGTCAA
18 96 130 CUST_3902_PI420321283 CUST_3902_PI420321283 FALSE SAV_3957 SAV3957 unmapped CATGTTCCTGTTCCTGACCTACTACCTCCAGGTCGTCCTCGGCTACTCCCCCCTGAAGAC
19 96 128 CUST_6886_PI420321283 CUST_6886_PI420321283 FALSE SAV_6945 SAV6945 unmapped AAGTCCGTACTGCTCAAGCTGATCTTCTCGGTGATGCTGCCGGGCCACCGGAACACGCTC
20 96 126 Tpim_15541_R Tpim_15541_R FALSE unmapped CTACGACACGACGGGTTACGGCCCGGCCTTCCAGGGCCTGCGTTCGGTGTGGCAGTGCGA

Total number of rows: 15744

Table truncated, full table size 2021 Kbytes.




Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp

Supplementary file Size Download File type/resource
GPL17101_Agilent-025954.txt.gz 536.5 Kb (ftp)(http) TXT

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