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Status
Public on Apr 26, 2013
Title
Agilent-021791 D. melanogaster (FruitFly) Oligo Microarray - V2 (Feature Number version)
Technology type
in situ oligonucleotide
Distribution
commercial
Organism
Drosophila melanogaster Manufacturer
Agilent Technologies
Manufacture protocol
see manufacturer's web site at http://www.agilent.com/
Description
D. melanogaster (FruitFly) Oligo Microarray 4x44K - V2
Submission date
Apr 26, 2013
Last update date
Feb 12, 2014
Organization
Agilent Technologies
E-mail(s)
[email protected] Phone
877-424-4536
URL
http://www.agilent.com Department
Street address
City
Palo Alto
State/province
CA
ZIP/Postal code
94304
Country
USA
Samples (144)
GSM1129997 , GSM1129998 , GSM1129999 , GSM1130000 , GSM1130001 , GSM1130002
GSM1130003 ,
GSM1130004 ,
GSM1130005 ,
GSM1130006 ,
GSM1130007 ,
GSM1130008 ,
GSM1130009 ,
GSM1130010 ,
GSM1130011 ,
GSM1130012 ,
GSM1130013 ,
GSM1130014 ,
GSM1130015 ,
GSM1130016 ,
GSM1130017 ,
GSM1130018 ,
GSM1130019 ,
GSM1130020 ,
GSM1130021 ,
GSM1130022 ,
GSM1130023 ,
GSM1130024 ,
GSM1130025 ,
GSM1130026 ,
GSM1130027 ,
GSM1130028 ,
GSM1130029 ,
GSM1130030 ,
GSM1130031 ,
GSM1130032 ,
GSM1130033 ,
GSM1130034 ,
GSM1130035 ,
GSM1130036 ,
GSM1130037 ,
GSM1130038 ,
GSM1130039 ,
GSM1130040 ,
GSM1130041 ,
GSM1130042 ,
GSM1130043 ,
GSM1130044 ,
GSM1130045 ,
GSM1130046 ,
GSM1130047 ,
GSM1130048 ,
GSM1130049 ,
GSM1130050 ,
GSM1130051 ,
GSM1130052 ,
GSM1326525 ,
GSM1326526 ,
GSM1326527 ,
GSM1326528 ,
GSM1326529 ,
GSM1326530 ,
GSM1326531 ,
GSM1326532 ,
GSM1326533 ,
GSM1326534 ,
GSM1326535 ,
GSM1326536 ,
GSM1326537 ,
GSM1326538 ,
GSM1326539 ,
GSM1326540 ,
GSM1326541 ,
GSM1326542 ,
GSM1648357 ,
GSM1648358 ,
GSM1648359 ,
GSM1648360 ,
GSM1648361 ,
GSM1648362 ,
GSM1648363 ,
GSM1648364 ,
GSM1648365 ,
GSM1648366 ,
GSM1648367 ,
GSM1648368 ,
GSM1648369 ,
GSM1648370 ,
GSM1648371 ,
GSM1979671 ,
GSM1979672 ,
GSM1979673 ,
GSM1979674 ,
GSM1979675 ,
GSM1979676 ,
GSM1979677 ,
GSM1979678 ,
GSM1979679 ,
GSM1979680 ,
GSM1979681 ,
GSM1979682 ,
GSM1979683 ,
GSM2176773 ,
GSM2176774 ,
GSM2176775 ,
GSM2176776 ,
GSM2176777 ,
GSM2176778 ,
GSM2475089 ,
GSM2475090 ,
GSM2475091 ,
GSM2475092 ,
GSM2475093 ,
GSM2475094 ,
GSM2475095 ,
GSM2475096 ,
GSM2572879 ,
GSM2572880 ,
GSM2572881 ,
GSM2572882 ,
GSM2572883 ,
GSM2572884 ,
GSM2572885 ,
GSM2572886 ,
GSM2572887 ,
GSM2572888 ,
GSM2572889 ,
GSM2572890 ,
GSM2572891 ,
GSM2572892 ,
GSM2572893 ,
GSM2572894 ,
GSM3349764 ,
GSM3349765 ,
GSM3349766 ,
GSM3349767 ,
GSM3349768 ,
GSM3349769 ,
GSM3360507 ,
GSM3360508 ,
GSM3360509 ,
GSM3360510 ,
GSM3360511 ,
GSM3360512 Series (13)
GSE46425 Using natural variation Drosophila to discover previously unknown ER stress genes
GSE54915 Analysis of genes regulated by Akirin and Brahma upon IMD pathway activation in drosophila S2 cells
GSE67512 Genomewide measurements of neural-specific mRNA decay in Drosophila embryos
GSE76298 Comparison of testis transcriptome changes resulting from mutations in dany and representative meiotic arrest genes
GSE81857 Identification of the genes regulated by maternal Ovo-B in PGCs in Drosophila melanogaster.
GSE94420 Identification of glaikit in a genome-wide expression profiling for axonal bifurcation of the mushroom body in Drosophila. [Agilent-021791]
GSE94422 Identification of glaikit in a genome-wide expression profiling for axonal bifurcation of the mushroom body in Drosophila.
GSE97604 Identification of glaikit in a genome-wide expression profiling for axonal bifurcation of the mushroom body in Drosophila (25 C)
GSE97605 Identification of glaikit in a genome-wide expression profiling for axonal bifurcation of the mushroom body in Drosophila (29 C)
GSE97606 Identification of glaikit in a genome-wide expression profiling for axonal bifurcation of the mushroom body in Drosophila (white pupa)
GSE97607 Identification of glaikit in a genome-wide expression profiling for axonal bifurcation of the mushroom body in Drosophila
GSE118881 Drosophila egg chambers: control vs. ectopic JAK/STAT and EGFR signaling
GSE119185 Topoisomerase 3B Interacts with RNAi Machinery to Promote Heterochromatin Formation and Transcriptional Silencing
Data table header descriptions ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE
Data table ID COL ROW NAME SPOT_ID CONTROL_TYPE REFSEQ GB_ACC LOCUSLINK_ID GENE_SYMBOL GENE_NAME UNIGENE_ID ENSEMBL_ID TIGR_ID ACCESSION_STRING CHROMOSOMAL_LOCATION CYTOBAND DESCRIPTION GO_ID SEQUENCE 1
266
170
GE_BrightCorner
GE_BrightCorner
pos
2
266
168
DarkCorner
DarkCorner
pos
3
266
166
DarkCorner
DarkCorner
pos
4
266
164
DarkCorner
DarkCorner
pos
5
266
162
DarkCorner
DarkCorner
pos
6
266
160
DarkCorner
DarkCorner
pos
7
266
158
DarkCorner
DarkCorner
pos
8
266
156
DarkCorner
DarkCorner
pos
9
266
154
DarkCorner
DarkCorner
pos
10
266
152
DarkCorner
DarkCorner
pos
11
266
150
DarkCorner
DarkCorner
pos
12
266
148
A_09_P024466
A_09_P024466
FALSE
NM_136405
NM_136405
35569
Hsepi
Heparan sulfate C5-epimerase
FBgn0033087
fly|FBtr0086145|fly|FBtr0302190|ref|NM_136405|ref|NM_001169591
chr2R:2558646-2558587
dm|2R42C4
Heparan sulfate C5-epimerase [Source:FlyBase gene name;Acc:FBgn0033087] [FBtr0086145]
GO:0006024(glycosaminoglycan biosynthetic process)|GO:0016021(integral to membrane)|GO:0016857(racemase and epimerase activity, acting on carbohydrates and derivatives)
ACGTGAACCAGTTACTTCTGTTAGCCACCATCGACAGCGATCCATTAATTGCACAAACTG
13
266
146
A_09_P039721
A_09_P039721
FALSE
AY051565
Dm.4563
dgc|FI09605|dgc|GH21352|gb|AY051565|gb|BT044430
chrX:17094814-17094755
dm|X15F2
Drosophila melanogaster GH21352 full length cDNA. [AY051565]
TGTGAAACCAAATCCTTACTCGTCGGGTGGTTGTCAATGAAAATTGGTTGTTTATGAAAA
14
266
144
A_09_P079821
A_09_P079821
FALSE
NM_169510
NM_169510
41640
Dic1
Dicarboxylate carrier 1
FBgn0027610
fly|FBtr0082747|fly|FBtr0082748|ref|NM_169510|ref|NM_142022
chr3R:9194568-9194627
dm|3R87E8
Dicarboxylate carrier 1 [Source:FlyBase gene name;Acc:FBgn0027610] [FBtr0082747]
GO:0005310(dicarboxylic acid transmembrane transporter activity)|GO:0005315(inorganic phosphate transmembrane transporter activity)|GO:0005739(mitochondrion)|GO:0005740(mitochondrial envelope)|GO:0008272(sulfate transport)|GO:0015116(sulfate transmembrane transporter activity)|GO:0015117(thiosulfate transmembrane transporter activity)|GO:0015131(oxaloacetate transmembrane transporter activity)|GO:0015140(malate transmembrane transporter activity)|GO:0015141(succinate transmembrane transporter activity)|GO:0015709(thiosulfate transport)|GO:0015729(oxaloacetate transport)|GO:0022857(transmembrane transporter activity)|GO:0035435(phosphate ion transmembrane transport)|GO:0071422(succinate transmembrane transport)|GO:0071423(malate transmembrane transport)
TATGCTAGCAAAATATTTGTTGTTAAGCGTTCAATGCCCGCTATCCCGAAATATATACTT
15
266
142
A_09_P212475
A_09_P212475
FALSE
EL879439
43494
Obp99c
Odorant-binding protein 99c
Dm.6182
gb|EL879439
chr3R:25512649-25512708
dm|3R99B7
IP09415.3prime IP Drosophila melanogaster iPCR Amplified Library Drosophila melanogaster cDNA clone IP09415 3, mRNA sequence [EL879439]
GO:0005549(odorant binding)|GO:0005576(extracellular region)|GO:0007606(sensory perception of chemical stimulus)
TTGCTCATATTTGGTATTTTGGGGAATCTGATTATTTAAAGCAACAAAGGTGGGATTCCT
16
266
140
A_09_P077866
A_09_P077866
FALSE
NM_078524
NM_078524
31738
Smox
Smad on X
FBgn0025800
fly|FBtr0071192|ref|NM_078524|dgc|RE53485|dgc|LD15813
chrX:8032578-8032519
dm|X7D14
Smad on X [Source:FlyBase gene name;Acc:FBgn0025800] [FBtr0071192]
GO:0003700(sequence-specific DNA binding transcription factor activity)|GO:0005072(transforming growth factor beta receptor, cytoplasmic mediator activity)|GO:0005515(protein binding)|GO:0005667(transcription factor complex)|GO:0006355(regulation of transcription, DNA-dependent)|GO:0007179(transforming growth factor beta receptor signaling pathway)|GO:0007346(regulation of mitotic cell cycle)|GO:0007411(axon guidance)|GO:0007476(imaginal disc-derived wing morphogenesis)|GO:0016319(mushroom body development)|GO:0048666(neuron development)|GO:0048813(dendrite morphogenesis)
CACTTACATGTGGGATATATATCTTTACAAGCATATATGAGAGAGAACATGTATTTGGCG
17
266
138
A_09_P202685
A_09_P202685
FALSE
tc|TC248091
chr3L:301043-301102
dm|3L61C1
Rep: CG1225-PC, isoform C - Drosophila melanogaster (Fruit fly), partial (8%) [TC248091]
GCACCTTGAACAACTTTAACAACAAAAATACTAGACAGGATGAGCATACTCCGTGCGACA
18
266
136
A_09_P010346
A_09_P010346
FALSE
NM_001169773
NM_001169773
37481
HmgD
High mobility group protein D
FBgn0004362
fly|FBtr0071709|fly|FBtr0301410|fly|FBtr0071708|ref|NM_001169773
chr2R:17603704-17603763
dm|2R57F10
High mobility group protein D [Source:FlyBase gene name;Acc:FBgn0004362] [FBtr0071709]
GO:0000790(nuclear chromatin)|GO:0003680(AT DNA binding)|GO:0006325(chromatin organization)|GO:0007517(muscle organ development)|GO:0008301(DNA binding, bending)|GO:0048813(dendrite morphogenesis)
GACAACCGGCAGGAAAGGAGAAGAAATAAGATTAGCAGGATGTGCGTTGAGGTGTTTTTT
19
266
134
A_09_P206120
A_09_P206120
FALSE
NM_165227
35070
CadN
Cadherin-N
FBgn0015609
fly|FBtr0081015|fly|FBtr0100313|fly|FBtr0100315|fly|FBtr0081016
chr2L:17647402-17647343
dm|2L36D1
Cadherin-N [Source:FlyBase gene name;Acc:FBgn0015609] [FBtr0081015]
GO:0004872(receptor activity)|GO:0005509(calcium ion binding)|GO:0005515(protein binding)|GO:0005886(plasma membrane)|GO:0005887(integral to plasma membrane)|GO:0005911(cell-cell junction)|GO:0007155(cell adhesion)|GO:0007156(homophilic cell adhesion)|GO:0007411(axon guidance)|GO:0007412(axon target recognition)|GO:0007413(axonal fasciculation)|GO:0008013(beta-catenin binding)|GO:0016021(integral to membrane)|GO:0016318(ommatidial rotation)|GO:0016339(calcium-dependent cell-cell adhesion)|GO:0030424(axon)|GO:0030425(dendrite)|GO:0031290(retinal ganglion cell axon guidance)|GO:0042803(protein homodimerization activity)|GO:0044331(cell-cell adhesion mediated by cadherin)|GO:0045296(cadherin binding)|GO:0045463(R8 cell development)|GO:0045467(R7 cell development)|GO:0048675(axon extension)|GO:0048814(regulation of dendrite morphogenesis)|GO:0048841(regulation of axon extension involved in axon guidance)|GO:0048846(axon extension involved in axon guidance)|GO:0050774(negative regulation of dendrite morphogenesis)|GO:0050839(cell adhesion molecule binding)
CAAGAGCATAGCAAACTGCTGGAAAAACTAACAAATCAATTGTGTCAGTATCGAAAATGA
20
266
132
A_09_P221285
A_09_P221285
FALSE
tc|TC244345
chr4:579210-579269
dm|4102C5
TGAGTTCCCGTATTCGCTCGTATTAGATGAATATGTATACAAAAATCAGCTTGCTAAGTT
45220 32859 Kbytes .Supplementary data files not provided
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