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Platform GPL16121 Query DataSets for GPL16121
Status Public on Nov 13, 2012
Title "Dehalococcoides ethenogenes" strain 195 with Mixed Community Sequences [Probe Name version]
Technology type in situ oligonucleotide
Distribution custom-commercial
Organism Dehalococcoides mccartyi 195
Manufacturer Agilent
Manufacture protocol see manufacturer's web site at http://www.agilent.com/
 
Description "Dehalococcoides ethenogenes" strain 195 with additional community members and luciferase. Arrays of this design have barcodes that begin with 16023019 or 2523019. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). To match data scanned on an Axon scanner, use the RefNumber column contained in the Agilent-provided GAL file as the ID_REF column in sample submissions.
 
Contributor(s) Mansfeldt CB, Richardson RE, Rowe AR, Hug L, Heavner G
Submission date Sep 29, 2012
Last update date Nov 13, 2012
Contact name Cresten Mansfeldt
E-mail(s) [email protected]
Organization name Cornell University
Street address 220 Hollister Hall
City Ithaca
State/province NY
ZIP/Postal code 14850
Country USA
 
Samples (8) GSM1011510, GSM1011511, GSM1011512, GSM1011513, GSM1011514, GSM1011515 
Series (1)
GSE41231 Dehalococcoides mccartyi strain 195's genome-wide transcriptomic response to batch feeding of 1,2,3,4-Tetrachlorobenzene
Relations
Alternative to GPL10023

Data table header descriptions
ID Name
ORF Gene
GENOME_ACC GenBank Accession
GENE_SYMBOL Gene Symbol
GENE_NAME Gene Name
DESCRIPTION Gene Description
SEQUENCE Probe 60 mer Sequence
SPOT_ID

Data table
ID ORF GENOME_ACC GENE_SYMBOL GENE_NAME DESCRIPTION SEQUENCE SPOT_ID
10_D2CL_Anaerolinea.sp.(Chlorof... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 TAATTCGATGTTACACGAAGAACCTTACCAGGGTTTGACATACAAGTGGTAGGGATCCGA
11_DCL2_Syntrophomonas_sp Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 AAGCTGAAAAAGACGCATGTTTTTTTCAGGGAAGATGGCCTCTGAATATGCTATCGCTAG
12_D2CL_Clost/Thermovenabulum.sp. Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 CTTATACTTAGTTGCCAGCACTTAAAGGTGGGCACTCTAAGTAGACCGCCGTCGATAAGA
13_DCL2_Syntrophomonas_sp2 Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 AAAGACGCATGTTTTTTTCAGGGAAGATGGCCTCTGAATATGCTATCGCTAGTAGATGGG
14_D2CL_Smithella.sp. Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 GATTAGATACTCTGGTAGTCCACGCTGTAAACGATGTTCACTAGGTGTTGGGGGTATTGA
16_DCL2_Carnibacterium.sp.(1470) Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 AGGGCAGCCAAACCGCGAGGTTGAGCGAATCCCAAAATGCTTGTCTCAGTTCAGATTGCA
17_D2CL_Syntropomonad/Aminomona... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 TTACCTGGGTTTGACATGCACGTGGTACGGAGATGAAAGTTGAAGGACCCTGTAGAGATA
18_DCL2_Carnibacterium.sp.(9511... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 TTAGAGAAGAACAAGGATGAGCGTAACTACTCATCCCCTGACGGTATCTAACCAGAAAGC
19_D2CL_Clost/Eubac/Alkalaphilu... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 TTGAGTACAGGAGAGGAAGGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGG
1_D2CL_Dysgonomonas.sp/Bacteroides Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 ATCATTAGTTACTAACAGGTCATGCTGAGGACTCTAGTGAGACTGCCATCGTAAGATGCG
20_DCL2_Clost/Alkiaphilus/Eubac... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 TCAAATCATCATGCCCTTTATGACCTGGGCTACACACGTGCTACAATGGCCTGTACAAAG
21_DCL2_Soehngenia_saccharolyti... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 AAAGAGTTCGTAGGCGGTCTGATAAGTCAGATGTGAAAGGCGTAGGCTTAACCTATGTAA
22_DCL2_Clostridium_acidaminoph... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 TAATTCGAAGCAACGCGAAGAACCTTACCTGGACTTGACATCCCTTTGACCGCTTCTTAA
23_D2CL_Eubacterium.sp._A Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 GAGGTGAAAGGCTATGGCTCAACCATAGTGAGCCTTTGGAACTGCCGGACTTGAGTACAG
24_D2CL_Clost/Acetovibrio.sp. Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 CTACACACGTACTACAATGGCTGTTAACAATGAGTTGCTATCACGCGAGTGTGAGCTAAA
25_D2CL_Soehngenia.sp.(Clostridia Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 TACTAGAGATAGTAATTTATCCTTCGGGATACAGGGGACACAGGTGGTGCATGGTTGTCG
26_D2CL_Magnetobacterium.sp.(Ni... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 TTATTGGATGTAGCAATACATTCAATAGATTAGTGGCGCACGGGTGAGTAACACGTAGGC
27_D2CL_Bacteria/Dictyoglomus.sp.2 Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 ATGCTAAGCGAAGGACCTTACCAAGGTTTGACATGCTAATGGTAGTGAATTGAAAGAGGA
28_DCL2_Anaerovorax_sp. Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 CTTAACTATTGTAAGCCTTGCGAACTGTGTGGCTTGAGTGCAGGAGAGGAAAGTGGAATT
29_D2CL_Anaerolinea.sp.2(Chloro... Mixed Community Culture 16SrRNA Sequence for Community Members in Rowe et al. 2008 GTTTAATTCGTTGCTACACGAAGAACCTTACCTGGGTTTGACATAGCAGTGGTAGGGAAG

Total number of rows: 1687

Table truncated, full table size 204 Kbytes.




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