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Platform GPL15541 Query DataSets for GPL15541
Status Public on May 09, 2012
Title NimbleGen_BIOMA_Zymomonas mobilis_array [DesignID 549081]
Technology type in situ oligonucleotide
Distribution non-commercial
Organism Zymomonas mobilis subsp. mobilis ZM4 = ATCC 31821
Manufacturer NimbleGen
Manufacture protocol CapitalBio Corporation
 
Description BIOMA_Zymomonas mobilis ATCC31821_furfural stress_arra

Zymomonas mobilis subsp. mobilis ZM4 chromosome, complete genome [BUILD 1102]

DESIGN_ID: 549081

designname: 110218_ZmobilisZM4_YR_exp

native array description file: 110218_ZmobilisZM4_YR_exp.ndf
native array description file: 110218_ZmobilisZM4_YR_exp.ng
 
Submission date May 08, 2012
Last update date May 09, 2012
Contact name Mingxiong He
E-mail(s) [email protected]
Organization name Biogas Institute of Ministry of Agriculture
Department Biomass Energy Technology Research Centre
Street address Section 4-13, Renming Nanlu
City Chengdu
State/province Sichuan
ZIP/Postal code 610041
Country China
 
Samples (12) GSM928987, GSM928988, GSM928989, GSM928990, GSM928991, GSM928992 
Series (2)
GSE37848 Transcriptome Profiling of Zymomonas mobilis under furfural stress
GSE39558 Transcriptome Profiling of Zymomonas mobilis Under ethanol stress

Data table header descriptions
ID SEQ_ID
SEQ_UNIQUE
ORF Entrez locus_tag name of the ORF to which the indicated probe is directed
GENE_ID Entrez GeneID number for the ORF to which the indicated probe is directed
GENOME_ACC GenBank accession number of the Zymomonas mobilis chromosome or of the resident plasmid pZZM401
SECONDARY_NAME
FUNCTION
DESCRIPTION

Data table
ID SEQ_UNIQUE ORF GENE_ID GENOME_ACC SECONDARY_NAME FUNCTION DESCRIPTION
ZMO0001110200000001 1 ZMO0001 3188777 NC_006526 GI:56550897;InterPro:IPR000531;InterPro:IPR012910;GeneID:3188777 TonB-dependent receptor plug PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bxe:Bxe_C0393 putative TonB-dependent siderophore receptor
ZMO0002110200000002 2 ZMO0002 3187524 NC_006526 GI:56550898;InterPro:IPR004839;GeneID:3187524 class I and II aminotransferase PFAM: aminotransferase class I and II; KEGG: bra:BRADO4744 putative histidinol-phosphate aminotransferase (HisC-like)
ZMO0003110200000003 3 ZMO0003 3188778 NC_006526 GI:56550899;InterPro:IPR002891;GeneID:3188778 adenylylsulfate kinase converts ATP and adenylyl sulfate to ADP and 3'-phosphoadenylyl sulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis
ZMO0004110200000004 4 ZMO0004 3188483 NC_006526 GI:56550900;InterPro:IPR000795;InterPro:IPR004161;InterPro:IPR011779;GeneID:3188483 sulfate adenylyltransferase subunit 1 may be GTPase that regulates ATP sulfurylase activity that is involved in converting ATP and sulfate to diphosphate and adenylylsulfate; in Escherichia coli this enzyme functions in cysteine biosynthesis in the first step; forms a heterodimer with CysD; part of the GTP-binding elongation factor family CysN/NodQ
ZMO0005110200000005 5 ZMO0005 3189459 NC_006526 GI:56550901;InterPro:IPR002500;InterPro:IPR011784;GeneID:3189459 sulfate adenylyltransferase subunit 2 with CysN catalyzes the formation of adenylylsulfate from sulfate and ATP
ZMO0006110200000006 6 ZMO0006 3189460 NC_006526 GI:56550902;InterPro:IPR000878;InterPro:IPR003043;InterPro:IPR006366;InterPro:IPR006367;GeneID:3189460 uroporphyrin-III C-methyltransferase KEGG: eta:ETA_27070 uroporphyrin-III C-methylase, siroheme synthase; TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; Siroheme synthase domain protein
ZMO0007110200000007 7 ZMO0007 3187620 NC_006526 GI:56550903;InterPro:IPR002500;InterPro:IPR004511;InterPro:IPR011800;GeneID:3187620 phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylyl sulfate into sulfite
ZMO0008110200000008 8 ZMO0008 3189461 NC_006526 GI:56550904;InterPro:IPR005117;InterPro:IPR006066;InterPro:IPR006067;InterPro:IPR011786;GeneID:3189461 sulfite reductase subunit beta hemoprotein; NADPH dependent; with the alpha subunit (a flavoprotein) catalyzes the reduction of sulfite to sulfide
ZMO0009110200000009 9 ZMO0009 3188491 NC_006526 GI:56550905;InterPro:IPR001094;InterPro:IPR001433;InterPro:IPR001709;InterPro:IPR003097;InterPro:IPR008254;InterPro:IPR010199;GeneID:3188491 sulfite reductase subunit alpha catalyzes the reduction of sulfite to sulfide in the biosynthesis of L-cysteine from sulfate; a flavoprotein with flavin reductase activity
ZMO0010110200000010 10 ZMO0010 3187525 NC_006526 GI:56550906;InterPro:IPR002725;GeneID:3187525 hypothetical protein PFAM: protein of unknown function DUF45; KEGG: ecg:E2348_C_1090 hypothetical protein
ZMO0011110200000011 11 ZMO0011 3187681 NC_006526 GI:283856169;GeneID:3187681 hypothetical protein KEGG: spq:SPAB_03436 hypothetical protein
ZMO0012110200000012 12 ZMO0012 3187687 NC_006526 GI:56550908;InterPro:IPR004559;InterPro:IPR006638;InterPro:IPR007197;InterPro:IPR010723;GeneID:3187687 coproporphyrinogen III oxidase catalyzes the oxygen-independent formation of protoporphyrinogen-IX from coproporphyrinogen-III
ZMO0013110200000013 13 ZMO0013 3187689 NC_006526 GI:56550909;InterPro:IPR002637;GeneID:3187689 putative deoxyribonucleotide triphosphate pyrophosphatase HAM1-like protein; Rec-dependent growth; RgdB; yggV; it is suspected that this protein functions to remove misincorporated bases such as xanthine or hypoxanthine
ZMO0014110200000014 14 ZMO0014 3187695 NC_006526 GI:56550910;InterPro:IPR001247;InterPro:IPR002381;InterPro:IPR015847;GeneID:3187695 ribonuclease PH RNase PH; tRNA nucleotidyltransferase; forms hexamers in Bacillus subtilis; phosphoroltic 3'-5' exoribonuclease; involved in maturation of tRNA precursors and removes terminal nucleotides near CCA acceptor arms of mature tRNAs
ZMO0015110200000015 15 ZMO0015 3187545 NC_006526 GI:56550911;InterPro:IPR002571;GeneID:3187545 heat-inducible transcription repressor Negative regulator of class I heat shock genes (grpE-dnaK-dnaJ and groELS operons). Prevents heat-shock induction of these operons
ZMO0016110200000016 16 ZMO0016 3187744 NC_006526 GI:56550912;InterPro:IPR000740;GeneID:3187744 GrpE protein PFAM: GrpE protein; KEGG: swi:Swit_1253 GrpE protein
ZMO0017110200000017 17 ZMO0017 3187550 NC_006526 GI:56550913;InterPro:IPR001678;InterPro:IPR006027;GeneID:3187550 Fmu (Sun) domain-containing protein PFAM: Fmu (Sun) domain protein; NusB/RsmB/TIM44; KEGG: swi:Swit_1940 Fmu (Sun) domain-containing protein
ZMO0018110200000018 18 ZMO0018 3187779 NC_006526 GI:56550914;InterPro:IPR000056;GeneID:3187779 ribulose-phosphate 3-epimerase KEGG: sal:Sala_3128 ribulose-phosphate 3-epimerase; PFAM: ribulose-phosphate 3-epimerase
ZMO0019110200000019 19 ZMO0019 3187775 NC_006526 GI:56550915;InterPro:IPR012480;GeneID:3187775 heparinase II/III family protein PFAM: Heparinase II/III family protein; KEGG: swi:Swit_1942 heparinase II/III family protein
ZMO0020110200000020 20 ZMO0020 3187557 NC_006526 GI:283856170;InterPro:IPR003741;GeneID:3187557 hypothetical protein PFAM: protein of unknown function DUF162; KEGG: gox:GOX1358 hypothetical protein

Total number of rows: 1935

Table truncated, full table size 472 Kbytes.




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Supplementary file Size Download File type/resource
GPL15541_110218_ZmobilisZM4_YR_exp.ndf.gz 8.6 Mb (ftp)(http) NDF
GPL15541_110218_ZmobilisZM4_YR_exp.ngd.gz 137.8 Kb (ftp)(http) NGD

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