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Platform GPL14830 Query DataSets for GPL14830
Status Public on Jul 15, 2012
Title ZB/SBS-NTU Plasmodium falciparum 11K v1.1
Technology type spotted oligonucleotide
Distribution non-commercial
Organism Plasmodium falciparum
Manufacturer ZB lab/SBS-NTU
Manufacture protocol Oligonucleotides were selected using the program OligoRankPick, described in Guangan Hu, Manuel Llinás, Jingguang Li, Peter Rainer Preiser & Zbynek Bozdech: Selection of long oligonucleotides for gene expression microarrays using weighted rank-sum strategy. BMC Bioinformatics 2007, 8:350.
The 70-bp oligonucleotides were spotted onto poly-L-lysine-coated microscopic slides as described in Zbynek Bozdech, Jingchun Zhu, Marcin P Joachimiak, Fred E Cohen, Brian Pulliam & Joseph L DeRisi: Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray. Genome Biology 2003, 4:R9.
Support glass
Coating polysine
 
 
Web link http://zblab.sbs.ntu.edu.sg/OligoRankPick/index.html
Contributor(s) Hu G, Bozdech Z, Llinás M, Li J, Preiser PR
Citation(s) 17880708
Submission date Nov 03, 2011
Last update date Jul 15, 2012
Contact name Ramya Ramadoss
E-mail(s) [email protected]
Organization name Nanyang Technological University, School of Biological Sciences
Lab Bozdech Lab (ZB Lab)
Street address 60 Nanyang Drive, 04n-18, School of Biological Sciences
City Singapore
ZIP/Postal code 637551
Country Singapore
 
Samples (6) GSM830867, GSM830868, GSM830869, GSM835201, GSM835202, GSM835203
Series (2)
GSE33605 P. falciparum (lab strain DD2) treated with ionomycin vs untreated [CGH]
GSE33764 P. falciparum (lab strain DD2) treated with A23187 vs untreated [CGH]

Data table header descriptions
ID
SEQUENCE Oligonucleotide sequence
ORF Corresponding GeneID of ORF in PlasmoDB (at http://www.plasmodb.org)
Annotation Gene Description
Chromosome Chromosome Number
Location Oligonucleotide location on chromosome
SPOT_ID

Data table
ID SEQUENCE ORF Annotation Chromosome Location SPOT_ID
aPF13_0068_0 AAAAAAACCCAAGTGCATTTATAACACCCCTAACCAAATTACAACATGAATCAACATTACCACGTACATT PF13_0068 hypothetical protein, conserved MAL13 519801
aMAL8P1.101_1 AAAAAAAGAAAGATGTGCCAACTAATGACGATAACAAAAACGCGACTGTACAAATGGATGTAAATATGAA MAL8P1.101 hypothetical protein, conserved MAL8 597603
aPF11_0116_0 AAAAAAAGAATATGGAGAACGTGCTGATATGCTACTAAAAAGGTTAGAGGAAGATAAAATGATACAAGGA PF11_0116 hypothetical protein MAL11 432417
aPFE0195w_2 AAAAAAAGATGCATCTATGGTTATACAAACACTAAAAGGATCTTCCATAAGACCGGTTATATTAACAGGA PFE0195w cation transporting P-ATPase MAL5 157625
aPF08_0033_0 AAAAAAAGGTCCCTCTAATTGTAGAACGTGTTGTTCCAGTATTAAAAGTAAACAGAGTTGAGAAAGAAAT PF08_0033 hypothetical protein, conserved MAL8 1038172
aPFI0810c_0 AAAAAAATAACAGGGAAAACTTATCTGACCAACCAGCTAGCCAAAGGAATATTGAATAAAACAAAAAAGC PFI0810c apicoplast Ufd1 precursor MAL9 691559
aPFI0695c_1 AAAAAAATCGTTAAGTAAAGACCGTATGGTTGGTCCGAGTGTTTTAGCTTTAAAATGTGTACTTGTATAT PFI0695c phospholipid or glycerol acyltransferase, putative MAL9 608352
aPFB0280w_3 AAAAAAATGTATACAAGAAAAGCAAAATGGAGAACACCAAATGACCAACGTTACAATTGTATTAGGAGGT PFB0280w hypothetical protein MAL2 254824
aMAL7P1.201_1 AAAAAAATTCGAAAGAGAGTGTCTGGGAATAGGTTTACTATCAAGGAAATTGGGGTTAATGATGATATGT MAL7P1.201 hypothetical protein, conserved MAL7 336418
aPFI0790w_0 AAAAAACACTGGAAGTTTAAACCAGGTATTTTCATCAACCCAAAATTCTTCCATAGTCATCAAATTTGGT PFI0790w thioredoxin, putative MAL9 674491
aPF10_0387_0 AAAAAACAGTGATGCAAATCGCAGAACAGTTTCAACAGGAGGAGAAGCAAAAAGCGAATGGTATTTTAGT PF10_0387 hypothetical protein MAL10 1595183
aPF14_0338_1 AAAAAACATGCCTGCACAAAACATTTCAAACACTTTAGTAAATTTACCTTATATACCTATGATACCCCCT PF14_0338 hypothetical protein MAL14 1444040
aMAL13P1.347_0 AAAAAACGAGCACAGTAAAACCAATCCAAACTTTGCTGGTGTAGAATTTCCATTAAGTCTTATTGAAAAA MAL13P1.347 hypothetical protein, conserved MAL13 2735684
aPFC0405c_0 AAAAAACTAGCCAAAACGGAAAATGTGCTAAATGGTGAGTTACCTGACGTTCAGGTGAAAAATTTAAAAA PFC0405c hypothetical protein, conserved MAL3 405776
aMAL8P1.139_4 AAAAAAGAAAGTACATATGATGAAAGGGGGGAGACACCTGAGTTAGTACAAACAAACGAAAATTTTATAT MAL8P1.139 folate/biopterin transporter MAL8 251203
aPF14_0493_0 AAAAAAGAAAGTATCAGTAAGTGAAATAAATTTCGATAGTGCAGTGGATGATGTTCAATGGTGTGGAAAT PF14_0493 sortilin, putative MAL14 2122410
aPFC0780w_3 AAAAAAGAGATGAATCGATTACAAGCACAGACTCGTCAAGCATTTATAACAGTAAAATGGATGAATGTTA PFC0780w hypothetical protein, conserved MAL3 724930
aMAL7P1.155_2 AAAAAAGAGGGAAAAAGGTGATGAGGAAAGTGAGGATGATATAAAAGATAAGGGTGGAAGGAATAAAAAA MAL7P1.155 hypothetical protein, conserved MAL7 1273804
aPFB0485c_0 AAAAAAGATAGTAAGATGCTTTAACCCATTTGTTCGCACAAAGACGATAAAAAAGAAAGTACAGCCAAAT PFB0485c hypothetical protein MAL2 437755
aPFI0795w_0 AAAAAAGGAAGAAACCGAGAAAAGCGGAGGAACTAATCAAAAAGATGTACAAGGTGGACATAATGTAAAA PFI0795w hypothetical protein, conserved MAL9 675913

Total number of rows: 11005

Table truncated, full table size 1456 Kbytes.




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